barSeed - Barley Seed Development Database

Probe CUST_4717_PI390587928

Source Contig U35_21107

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4717_PI390587928	Hv_44K_v2	GATGACCGACCGCATGATTGTAAGAGGTTATTTTTATCTCTATATCCCTTTTGGATTATG	1193	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372417	2064	2e-24	1990 - 2049	100	60 / 60	plus	ABC15023
MLOC	MLOC_54502.1	1587	2e-24	1447 - 1506	100	60 / 60	plus	ABC15023
JLOC1	JLOC1_35085.1	1592	8e-25	1448 - 1507	100	60 / 60	plus
Harvest21	ABC15023	1298	3e-25	1194 - 1253	100	60 / 60	plus	ABC15023
Harvest35	U35_21107	1298	3e-25	1194 - 1253	100	60 / 60	plus

Contig Sequence (1298 bp)

>U35_21107 1298 Hv_44K_v2
GCAGGACGTTCGACCATATGCCCGACCGGGACATGGCCTCCTGGCACCTCATGATCGAGG
GCTACGCGGCCAACGGGCTCGGTGACGCAGCGCTGCAGCTCTTCGAGGAGATGAAGCGGT
GCGGCATGGCGCCCACCGCGCGCACCTTCGTGCTGGTCCTCGACGCCTGCGCCAACTCGG
AGGCCATCGAGGAGGCATTCCTCTACTTCGACGCCATGTCGAGGGACCATGGCATCGAGC
CCGGCATGGAGCACTACGTCGGGATCATCGAGGTGCTGGGCAAGTCGGGGCACCTCGATG
AGGCCGTGGAGTACGTCGAGAAGCTGCCGTTTGAGCCCAACGCCATGATCTGGGAGTCGG
TCCTGAACCTTGCGCGCATGAACGGCGACATTGACCTCGAGGACCGGGTGGAGGAGCTGC
TGGTCTCGCTCGACCCGTCCAAGGCCAACCCCAAGAAGCTCCCGACCCCTCCTCCGAAGC
GGCGGCTCGGGATCAACATGCTCGACGGGAGGAACAAGCTGGGAGAGTACAGGCTGCCGC
CAAAGATTGAGAAGAAGGTGGTGAACGAGCAGCGCTACGTCCCGGACACGAGGTACGTGC
TCCACGACATCGACCAAGAGGCCAAGGAGCAGGCGCTGCTGTACCACAGCGAGCGTCTGG
CCATCGCCTACGGTCTGATCAGCACCCCGGCCAGGACCCCGCTGCGCATCATCAAGAACC
TCAGGATCTGCGGGGACTGCCACAACGCCATCAAGATCATGTCGAGGATCGTCGGGCGGG
AGCTCATCGTGAGGGACAACAAGCGGTTCCACCATTTCAAGGAGGGCAAGTGCTCCTGCG
GCGACTACTGGTGATCCAACATGGTTCCTGGATGATTTTATCTGATCGAAATGTGGCCTT
GTCGTCCAAGTCGAACTCTCTTTCTCGCTGTTCTATATGAACATATATGTCTACAGTGAG
ACATGCTCTTAGGGCGTAAGCAGTATCAAGATATCTACTGGTACTTGCTACTGGTAGAAG
TAGAGACTATCCCTTCCTTATAGCTATTTCGTCAGTATTTCTCGAATGCATGATGTCATT
TTTAGCCACTACCTGTTCGTATGCACTAGAAAACCATAGCTTCTTGATGCACAGATCAAT
CTCTTCTTCATATGGATCGATCGTCGTGTGCTTGGTATGGGATTCATGTAGCCGATGACC
GACCGCATGATTGTAAGAGGTTATTTTTATCTCTATATCCCTTTTGGATTATGATAATAA
GTAAATGGAAACTAGTCTTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_21107 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g09530.1	300	4e-177	protein\|pentatricopeptide, putative, expressed
Brachypodium v1_2	Bradi2g14520.1	526	9e-177
Arabidopsis v10	AT2G15690.1	579	9e-114	Tetratricopeptide repeat (TPR)-like superfamily protein \| chr2:6831855-6833594 REVERSE LENGTH=579