barSeed - Barley Seed Development Database

Probe CUST_4710_PI390587928

Source Contig U35_1725

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4710_PI390587928	Hv_44K_v2	CTTGTTGGAATATGCTTTCGCAGTTCTAAAGACTGTACAGCATTTTATTTTGTTGGGAAA	1047	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.967	1.683	1.143	0.695	0.228	0.264
Raw	2404.137	3203.541	1925.807	1830.367	209.245	268.362

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37060.1	3636	3e-21	3524 - 3583	97	58 / 60	plus	ABC16411
JLOC1	JLOC1_23950.2	3643	2e-21	3501 - 3560	97	58 / 60	plus
Harvest35	U35_1725	1318	3e-25	1048 - 1107	100	60 / 60	plus

Contig Sequence (1318 bp)

>U35_1725 1318 Hv_44K_v2
TTTTATAAAGATTTCAGACAGAGGTTCAGGCGGCTTTTGGGAACATCTTTCCGGCATCTC
AACTTTAAGCTTGCAATGAGTGTCCTGGCTTCAAAAATAGATTTTTCACACTACGAACCT
TCAGAACATGATACCAATATTACATTGAAGTTATTGAGAGATGTATTATCGCCACATGAC
ATGAAGCGACTAGAAGCATATTCAAACAACTTGGTCGATTATCATCTGATCTTGGATCTT
GTCCCTATCCTAGCACATGAGTACTTCTCAGAAAAGCTTCCTGTAACCCTACATGGTGCC
CAAGCTTCAGTTTTGTTCTGTATGGGTCTGCAGGACAAAGACATTGGCGCTACAAAGGAA
GAGCTTGGCATAGAAAGGGAACAAGTTCTATCTAATTTCATCAAGACAATGAAGAAGTTG
TACGGTTACCTTAATAACACTGCAGGAAAAGAAATTGAAGCAACCTTGCCGAGACTTAAG
GAAATTGAAGCCCCACTTAGCAGATCAATGGATGAAGACCTTGACGAAGCAGCTCAGGAA
GTGAAGGAAAAAAGAAGAGTCGCGGATGAAGCAGCTGTGGACCCAAAGTTATTGCAGAAG
TACGCGATTAAAGGAGATGACCTTGAGATTGAGAAAGCTCTGCAGAATGAGAAATTGTCT
GCAAGCGGCGTTATCAGTGTAAAATCCAGCAAAACAAGTGCTGACAAGAAAGAGAAGCAC
AGGGAAAGCAAAAAATCGAAAAGGAAAGGACAAGATAGTGGTGGTAGATCGGAGAAGAAG
AAGAATAGGACTTGAAGCTGCCACTTGGAATTGAGATGGTCTGATCCTGGTATTTTGAAA
TCGCCAGAGAAGCCTCTCCAAAGCCTCTCTAGTAGAAGGGGTAAGAGGGAGGCAGAGGTT
GCCAAACAGGCTATAATTTGTAGAATCTCCCTGACAAACCTCTCCAAAACCCTATGGCAC
CACCATGCCTCAATTTTGTTGTACCATTTGCTTCATTAGAATACTGGCCAATTGGAATTG
CAACGATGATTTTGATGTATCGCCTGTCTTGTTGGAATATGCTTTCGCAGTTCTAAAGAC
TGTACAGCATTTTATTTTGTTGGGAAATTTGTTGATTAAAGTGATGGAAAAAAAAAAAAA
AAAAACCGACAACGTTTATATAGCGGCCGCTGGGCCGTAGCGCATCAGGAGCTTGCTCCA
AGCACAAGCAATATCTTCGATCGATTGCGTCAGGCATTCACAATGCTGCTTATTATCTCA
TGGACGTCCTGCACGTAATAGCGATGTGCAGCATGGGACTTTGTTGAATTTGGCTGGC

Homology of Contig U35_1725 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g07300.1	660	7e-130	protein\|N-acetyltransferase 10, putative, expressed
Brachypodium v1_2	Bradi2g41187.1	1026	1e-139
Arabidopsis v10	AT1G10490.1	1028	7e-61	Domain of unknown function (DUF1726) ;Putative ATPase (DUF699) \| chr1:3453589-3459925 FORWARD LENGTH=1028