barSeed - Barley Seed Development Database

Probe CUST_470_PI415269222

Source Contig TA48891_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_470_PI415269222	Hv_44K_v2	TTATTTACTTTGATTTGATGCACATTATGCCGATACGTCGGCTGTGGAGGCCACGCATCT	951	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64918.1	2058	2e-24	1925 - 1984	100	60 / 60	plus	ABC16901
JLOC1	JLOC1_42663.1	2017	8e-25	1875 - 1934	100	60 / 60	plus
Harvest21	ABC16901	645	3e-25	86 - 145	100	60 / 60	minus	ABC16901
Harvest35	U35_7157	1096	3e-25	952 - 1011	100	60 / 60	plus

Contig Sequence (1065 bp)

>TA48891_4513 1065 Hv_44K_v2
CACGCGTCCGGCGTCGTGGAGATCCCCTCGCCGGACGTCTCGCTCCCCCGCAAGCTTGGC
GCGGAGTTCGTGGGAACGTTCATCCTCATCTTCTTCGCGACGGCGGCGCCGATCGTGAAC
CAGAAGTACGGCGGCGTGATCTCGCCGTTCGGGAACGCGGCGTGCGCGGGCCTGGCGGTG
ACGACCATCATCCTGTCGACGGGCCACATCTCCGGCGCGCACCTGAACCCGTCGCTGACC
ATCGCCTTCGCGGCGTTCCGTCACTTCCCCTGGCTCCAGGTCCCGGCCTACGTGACCGTC
CAGGTGCTGGGCTCCATCTGCGCCGGGTTCGCGCTCAAGGGTGTCTTCCACCCGTTCCTC
TCCGGCGGGGTCACCGTCCCCGACGTCGCCATCTCCACCGCCCAGGCCCTCTTCACCGAG
TTCATCATCACCTTCAACCTTCTCTTCGTCGTCACCGCCGTCGCCACCGACACCCGCGCG
GTGGGCGAGCTCGCCGGTATCGCGGTGGGAGCCGCCGTGACGCTCAACATCCTCGTGGCC
GGGCCGACGACGGGAGGGTCGATGAACCCGGTGAGGACGCTGGGGCCGGCGGTCGCGGCG
GGGAACTACAGGCAGCTGTGGATATACCTGGTGGCGCCGACGCTGGGCGCGGTGTGCGGC
GCCGGCGTGTACAAGCTGGTCAAGCTCAGAGACGTCAACGGCGAGACGCCGCGCCCGCAG
CGCAGCTTCCGACGCTGATCGATGTATGCGCACGTACTCCACCCCGTGCATTGTCCGGCT
GGTTGCTGATCTATGCCACTATCGATCGAGCAGCGGCGGTGAGATCTATTACTACTAGTA
CGATTTCCGTGTTTCCGTGCCACGGGCACACCGTGACTGCTAAAATTTGTGCGTTCCGTG
ATTGTAATAATGAATTGACGCCGTTTTGCTAGAACTGCGTGGACTTGTGCTTTATTTACT
TTGATTTGATGCACATTATGCCGATACGTCGGCTGTGGAGGCCACGCATCTGCCGTGTGA
ATGTACTGTTCTATCCGTGTGTATTCTACTCCCCCCCCCTGTTAT

Homology of Contig TA48891_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g36924.1	312	8e-148	protein\|aquaporin protein, putative, expressed
Brachypodium v1_2	Bradi3g30540.1	302	2e-142
Arabidopsis v10	AT4G10380.1	304	5e-115	\| Symbols: NIP5;1, NLM6, NLM8 \| NOD26-like intrinsic protein 5;1 \| chr4:6431530-6434510 REVERSE LENGTH=304