barSeed - Barley Seed Development Database

Probe CUST_4705_PI390587928

Source Contig U35_1730

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4705_PI390587928	Hv_44K_v2	AACTTGTACTCCTAGTACTTGGTTCACAAGTAAAGCGCCATAATTTTTCCTTGGTTCAAA	1342	GeneList: orangered4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.434	4.119	1.140	0.733	0.260	0.685
Raw	74.621	202.210	46.395	50.206	5.831	17.188

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK362211	1280	3e-21	1181 - 1237	98	57 / 58	plus	ABC05329 ABC05331
MLOC	MLOC_16430.1	2551	3e-21	61 - 117	98	57 / 58	minus	ABC05329 ABC05331
MLOC	MLOC_16430.2	1606	3e-21	10 - 66	98	57 / 58	minus	ABC05329 ABC05331
JLOC1	JLOC1_11308.1	2189	2e-21	1913 - 1969	98	57 / 58	plus
Harvest21	ABC05329	701	5e-23	15 - 73	98	59 / 60	minus	ABC05329
Harvest35	U35_1730	1416	3e-25	1343 - 1402	100	60 / 60	plus
Harvest35	U35_1728	590	5e-23	518 - 576	98	59 / 60	plus

Contig Sequence (1416 bp)

>U35_1730 1416 Hv_44K_v2
TCGAGCACTGTTGGCCTACTGACTGGCTCCACCTTCCTCCCATCCCACAGATCGATCACA
GCCTCACACCTCGCTTCATCGCTAGTTGCTTCCTGCTTCCATCTTGCTGCAGCACCCATC
CATCCATCACACGCTGCTGCTGCTGCTGCTGCTGAGGCGCTCGACCACCATCCATATCCA
TAATCCATGGCGGTGAAGGACTGCGGCGGGCACAAGGGCGGCTGCGAGTGCCACCGCCGC
CGGCTCTACCGCAAGTGCTGCGGCGCGCTGCTCGCCCTCGTCCTCCTCGCCCTCTTCATC
ATCCTCATCGTCTACCTGGTGCTCCGCCCCCACAAGCCCACCTTCTACCTGCAGGACCTG
GCGGTGCTCTGCCTCAACGTCACCCCGCCCACCTCCGCCTACCTCTTCACCACCATGCAG
GCCACGGTGGCGGCGCGCAACACCAACGACCGCGTCGGCGTCTACTACGACGAGACGGAC
ATGTACGCGCAGTACAAGGGCGTTGCCATCACCGTGCCCACCCGCCTCCCCGTCGCCTAC
CAGGGCCACCGGGACCAGTCGGTGTGGTCGCCCTACCTCCGTTCCATGGACAGCGTCGTG
CTCCCGCCGCAGCTCGCCATCGCGCTCGCGCAGGACGAGACGGCCGGGTACGTGCTGGTG
GACGTGCGCGTCGACGGCTGGGTGCGGTGGAAGGTGGGCACGTGGATCTCCGGCCACTAC
CACCTCCGGGTCAACTGCCCGGCCCTCATCAGGGTGAACGAGGGGAAGGGCAGCTACGGC
GCCACAACCGGCGGCGGCCCCGACTACTTCCGCTTCCAGCAGGCCGCCGCCTGCGCCGTC
GACATCTGATCGATCCGGTTCGGCTCGAGCTCCATCGATCAACCATGTGCATGCATGTCC
ACTTGTCCACACAAGAAATTCATTGCTTTTGGTTTTGGATAGCTTCCTGAATCTCATCCG
TCTTCTCTTTTTTTCTTTTGCCCGACGTAGTTTCTTCCTCTTCCTTTTGGGGCTCGATTG
CCGTTCTTTTCGGCAGAATCGATCTCGACTGGTTAAAGAAAAGAAAGCATGAATCGATGA
AAATTGGCTGAAAAAAAAAAAAAAAAATTACTGCTTTTCTTGTTGTTTAGATTAGAATTT
GGTTGGTGCTGGAGCCTAGCTTGGAGTGGAAGGGAATATTTATTGATTGATTGAAAAGGG
GGAAAGGATACATCCATATATATGGAGTAAACGTGAAGAACGGTGGAGATATTGGAGACC
ATGTCCATGTACAGGGAGAGAGAGAGAGAGAGAGGAAGGAAGTTCATGCCTAAAGGCTTG
ACTTGTACTGCTCCATTTGACTAACTTGTACTCCTAGTACTTGGTTCACAAGTAAAGCGC
CATAATTTTTCCTTGGTTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1730 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58860.1	221	7e-105	protein\|harpin-induced protein 1 domain containing protein, expressed
Brachypodium v1_2	Bradi5g26600.1	228	2e-105
Arabidopsis v10	None