barSeed - Barley Seed Development Database

Probe CUST_4704_PI390587928

Source Contig U35_1731

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4704_PI390587928	Hv_44K_v2	CACGGACTCAAAAGCATTCTTGTATGGCACAGTACATCATGTCAAATGAGATTTTTTAAT	1779	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.923	4.637	1.160	0.814	0.160	0.307
Raw	321.280	423.487	88.549	100.013	5.396	13.715

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364258	1933	2e-24	1760 - 1819	100	60 / 60	plus	ABC06168 ABC46764
MLOC	MLOC_5668.1	2049	2e-24	1911 - 1970	100	60 / 60	plus	ABC06168 ABC46764
JLOC1	JLOC1_3662.1	2138	8e-25	1972 - 2031	100	60 / 60	plus
Harvest21	ABC06168	1915	3e-25	1758 - 1817	100	60 / 60	plus	ABC06168
Harvest35	U35_1731	1937	3e-25	1780 - 1839	100	60 / 60	plus

Contig Sequence (1937 bp)

>U35_1731 1937 Hv_44K_v2
TCGAGCACTGTTGGCCGATCAGTGTCCTCCACAAGGAAAAAATATATACTCTACTACTAT
AACCAATACAAAAATACTAGTCCCTCAATAAGAAAATCTAGACAAGTTTTTCTTTTCTTT
TCTTTGTGAGTTCCCTTCCACCACCAACCTCTTGTTCGGCCGGCCGAATTGTCCCGCTCC
GGTTTGCTTCTTCTCCGGCGAGAGGAGAGGAGAGGAGTAGCTAACCTTGCCTGCTCCTCC
TGTGAGCGGTCTCCTCCCCGCAGGGCTGAGGAGATCTCTCGGGACCTCGGGACTGGGGCG
TGTATGATGGGGATTTCGCTTATGCCGATGAAGACGCCCACGAGGCTTCTTTGGAGCACC
AGCTTCTTCCGCCATAAGCTCGCCGCCATGATCGCCTCCTCGTCCTGCTTCTTATAAGAG
CCCCTCCTCCGCGCGGCAGCTGTACATATACCTACTTTCTCGTTTGATTTAGCCCCCCAC
CGATCGACGAACGACCAAGGCAACTTCTTGAAGCTTTTTTCCCTGCGATGGAGCCCGGCC
GGCTCATCTTCAACACGTCGGGCTCCGGCAACGGACAGATGCTCTTCATGGACTGCGGCG
CCGGCGCCGCCGGCATGTTCCATCGAGGGGTGAGGCCGGTCCTCGGCGGCATGGAAGAAG
GGCGCGGCGTGAAGCGGCCCTTCTTCACCTCGCCGGACGACCTGCTGGAGGAGGAGTACT
ACGACGAGCAGCTCCCGGAGAAGAAGCGACGCCTCACCCCGGAGCAGGTCCACCTGCTGG
AGAGGAGCTTCGAGGAGGAGAACAAGCTGGAGCCGGAAAGGAAGACGGAGCTGGCCCGCA
AGCTCGGGCTGCAGCCGCGCCAGGTGGCCGTCTGGTTCCAGAACCGCCGCGCCCGGTGGA
AGACAAAGACGCTCGAGCGCGACTTCGACCGCCTCAAGGCGTCCTTCGACGCCCTCCGCG
CCGACCACGACGCCCTCCTCCAGGACAACCACCGGCTCCGGTCACAGGTGGTGACGTTGA
CCGAGAAGATGCAAGAGAAGGAGGCGCCGGAAGGCTGCTTCGGCGCGGCCGTCGACGCCT
CGGAGTCGGAGCAGGCCACGGCGGAGGCGAAGGCTTCCTTGGCCGACGCCGAAGAGCAAG
CCGCGGCAGCGGAGGCGTTCGAGGTGCAGCAGCAGCAGCAGCAGCAGCTGCATGTGAAGG
ACGAGGAGAGGCTGAGCCCGGGGAGCGGCGGGAGCGCGATCCTGGACGCGAGGGACGCGC
TGCTCGGAGGCGGCTGCGGCCTCGCCGGCGTGGTCGACAGCAGCGTGGACTCGTACTGCT
TCCCGGGGGGCGCCGGTGCCGACGAGTACCACGAGTGCGTGGTGGGCCCCGTGGCGGGCG
GGATCCAGTCGGAGGAGGACGACGGCGCGGGCAGCGACGAGGGCTGCAGCTACTACCCCG
ACGACGCCGCCGCCGTCTTCTTCGCTGCCGCGCAAGGGCAGCACCACCATCACACGGACG
ATGACGATCAGGACGATGGTCAGATCAGCTACTGGATGTGGAACTAGCAGGCTAGCTCGC
GCATCAAGCGTGCGTGCGTGCGCTCGCCCCGAAATCAATCAATTTCGTATATTTCGCTCT
ATATCAGTAAAAGTTCGTGGCTTTTGTTTTCTCTTCTTGTATGCTTCCCGGTGTAATGTT
GGGTCACTACGAAGAAGCTGTATGCATATGCATTGTACGAGTTAGGGTAATATAGAGTAG
TATGTGGTAAAATCTGTCCTGATGTACGAGAAATAAGTGCACGGACTCAAAAGCATTCTT
GTATGGCACAGTACATCATGTCAAATGAGATTTTTTAATCATGTAAGTTGCCTGAAAAAA
AAAAAAAAAATTTCCATTATGCTTTACAATGGAAAGGGGGTTTAATGCCCGGTTCCCCTC
AAAAAAAAAAAAAAAAA

Homology of Contig U35_1731 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g49700.1	344	5e-112	protein\|homeobox associated leucine zipper, putative, expressed
Brachypodium v1_2	Bradi3g56180.1	341	9e-118
Arabidopsis v10	None