barSeed - Barley Seed Development Database

Probe CUST_4703_PI390587928

Source Contig U35_1732

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4703_PI390587928	Hv_44K_v2	TGTTGGCAGTTTTGGGTCAACAATGGCGAGCGGTAGATTATTGATTGATTGGACAAAAAA	1032	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.731	2.272	1.059	0.749	0.337	0.546
Raw	549.380	1132.431	450.940	509.965	79.367	138.436

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_8087.2	1519	5e-22	1363 - 1417	100	55 / 55	plus
JLOC1	JLOC1_8087.1	1590	5e-22	1434 - 1488	100	55 / 55	plus
Harvest21	ABC04935	1095	3e-25	1025 - 1084	100	60 / 60	plus	ABC04935
Harvest35	U35_1732	1103	3e-25	1033 - 1092	100	60 / 60	plus

Contig Sequence (1103 bp)

>U35_1732 1103 Hv_44K_v2
GTGAACAATGGATACCCTGACGGCGGAGAGTGGTGCAAAGCATTAACAAAATAGCCTGGT
TGAAATGGCGTCGCTGTACGCCCATATCAGAACCAGACTGGAAGGGATCATCCTGACTTC
ACCAGCTGTGCGTGTAAAACCAGCGCATCCGATAGTCGGGGCAGTGGCACCGATATTCTC
TCTGATTGCACCCAAGTTCCAATTCAAGGGAGCCAACAAGCGGGGCATCCCGGTGTCCCG
CGACCCTGCGGCGCTGCTAGCAAAGTACTCTGACCCGCTGGTCTACACGGGGCCGATCAG
GGTCCGTACGGGCCACGAGATCCTGCGCATCTCCTCCTACCTGCTGCACAACCTGAAGAA
GGTGACTGTCCCGTTTGTAGTCCTGCACGGCACGGCGGACCGGGTGACGGACCCGCTGGC
CTCGCAGGAGCTCTACAGGGAGGCGGCGTCGAGGCACAAGGACCTGCGGCTGTACGAGGG
GTTCCTGCACGACCTGCTCTTCGAACCCGAGCGCGACGAGATCGCCGCCGACATCATCAG
GTGGATGGACCGGACGCTCGGTCTGCAGGCCGTATGAAGGGTAGCTGTTGTCTGAAGATG
GGGGAGGAGGAGTTGAACATAGTGTGCGGATCGCTCCGATCACAGCCATGGGCATCATGG
CATGACATGGCATGGCAAGACATGCATGATGGCTCTGGTCTGATTCTTGATGGCGTTTTC
TGGAAGTGGTATGCAGATTGGCTGTGATATTCCTCGTCTTACGGTGCTGCCGGTGCATTG
CAGACCAGTGAACTGAAAAGCGAGTGGCTTGTGCTTTGTATGAATGCTACATTATTCATA
TACCTATGATAACAAAAGTGGTGAGAAAAAAAAAAAAAAAAAGCGTGCTGTTGGCTTGGA
AAACCTTTCTCGATCCTGTAAAGTTTGCTGCTCCAATTATTGGAGGGAACAACAAGCAGC
TGCACGCATCCTGGCGGTTAGCCGTCTCGGGCCAGCATGTGCCAACTGCAATGTGGTTGG
GAGGGACCGTTTTGTTGGCAGTTTTGGGTCAACAATGGCGAGCGGTAGATTATTGATTGA
TTGGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_1732 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10250.2	292	8e-101	protein\|hydrolase, alpha/beta fold family domain containing protein, expressed
Brachypodium v1_2	Bradi2g06120.1	401	2e-104
Arabidopsis v10	AT5G11650.1	390	5e-79	alpha/beta-Hydrolases superfamily protein \| chr5:3745069-3746816 FORWARD LENGTH=390