barSeed - Barley Seed Development Database

Probe CUST_4702_PI390587928

Source Contig U35_1733

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4702_PI390587928	Hv_44K_v2	AAAGCATTAACAAAATAGCCTGGCGTCGCTGTACGCCCATATCAGAACCAGACTGGAAGG	35	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.260	1.864	1.611	0.992	0.787	0.656
Raw	15.629	36.395	26.431	27.016	6.883	6.402

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC04936	692	3e-25	36 - 95	100	60 / 60	plus
Harvest35	U35_1733	694	3e-25	36 - 95	100	60 / 60	plus

Contig Sequence (694 bp)

>U35_1733 694 Hv_44K_v2
TGAACAATGGATACCCTGACGGCGGAGAGTGGTGCAAAGCATTAACAAAATAGCCTGGCG
TCGCTGTACGCCCATATCAGAACCAGACTGGAAGGGATCATCCTGACTTCACCAGCTGTG
CGTGTAAAACCAGCGCATCCGATAGTCGGGGCAGTGGCACCGATATTCTCTCTGATTGCA
CCCAAGTTCCAATTCAAGGGAGCCAACAAGCGGGGCATCCCGGTGTCCCGCGACCCTGCG
GCGCTGCTAGCAAAGTACTCTGACCCGCTGGTCTACACGGGGCCGATCAGGGTCCGTACG
GGCCACGAGATCCTGCGCATCTCCTCCTACCTGCTGCACAACCTGAAGAAGGTGACTGTC
CCGTTTGTAGTCCTGCACGGCACGGCGGACCGGGTGACGGACCCGCTGGCCTCGCAGGAG
CTCTACAGGGAGGCGGCGTCGAGGCACAAGGACCTGCGGCTGTACGAGGGGTTCCTGCAC
GACCTGCTCTTCGAACCCGAGCGCGACGAGATCGCCGCCGACATCATCAGGTGGATGGAC
CGGACGCTCGGTCTGCAGGCCGTATGAAGGGTAGCTGTTGTCTGAAGATGGGGGAGGAGG
AGTTGAACATAGTGTGCGGATCGCTCCGATCACAGCCATGGGCATCATGGCATGACATGG
CATGGCAAGACATGCATGATGGCTCTGGTCTGAT

Homology of Contig U35_1733 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10250.2	292	1e-102	protein\|hydrolase, alpha/beta fold family domain containing protein, expressed
Brachypodium v1_2	Bradi2g06120.1	401	2e-106
Arabidopsis v10	AT5G11650.1	390	7e-81	alpha/beta-Hydrolases superfamily protein \| chr5:3745069-3746816 FORWARD LENGTH=390