barSeed - Barley Seed Development Database

Probe CUST_4701_PI390587928

Source Contig U35_1734

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4701_PI390587928	Hv_44K_v2	TAAAATTATGCTGGAGAATCCAGATGTTCCTTGTTTTCTACTCGGCCACTCCACTGGTGG	649	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.091	1.749	1.262	1.186	0.356	0.654
Raw	39.491	102.690	60.863	96.306	9.316	19.483

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371666	1548	2e-24	649 - 708	100	60 / 60	plus	ABC04935
MLOC	MLOC_12095.3	1204	2e-24	960 - 1019	100	60 / 60	minus	ABC04935
MLOC	MLOC_12095.1	1231	2e-24	757 - 816	100	60 / 60	minus	ABC04935
MLOC	MLOC_12095.2	1379	2e-24	905 - 964	100	60 / 60	minus	ABC04935
JLOC1	JLOC1_8087.2	1519	8e-25	330 - 389	100	60 / 60	plus
JLOC1	JLOC1_8087.1	1590	8e-25	330 - 389	100	60 / 60	plus
Harvest21	ABC04937	1028	3e-25	329 - 388	100	60 / 60	plus
Harvest35	U35_1734	1349	3e-25	650 - 709	100	60 / 60	plus

Contig Sequence (1349 bp)

>U35_1734 1349 Hv_44K_v2
GACCGCGTAAAACGCGAAGAAAAAGTAAAGCACGAAAAACGCGCAGCGGCAGGGGGGGGA
GAGCCATGGAGATGGGCGGCGACGAGATGATGATGACTTCGGGCGCCACGGGCCGGATCG
TGCCCGTCTTCCGCTCCGTGCTGTCCCGCCGCGCGCTGCTCCGCCTCGCCGTCGCGCTCC
ACTCGCTTTTCCTCTGGCTCCTCCTCCTCGTCGGCCGCCGCCGCCGCCCCGACGCCGCCA
GCCCGGCGGAGCCCGGCCGCCCCGGGAAGGCCAGGAGCAGGCGCAGGGCCGCGGAGGAGG
AGGACGTGCGCCGCCGCCGGGCGCTCGCGGAGGAGGTGCCCATGGCGGAGGACGACTCGG
ACGCGGACGGGAGGACGTGCGGCACGTTCGTCATCGCCGGGGCCAGGCGGAACGCGCTCT
TCTGCCGCGTCTGGGCGCCGGCGGTCGGCACGGAGACGAGGGCCATTCTGCTCATCGTAC
ATGGGCTCAATGAACATAGTGGGAGGTATTTGCATTTTGCCGAGCAGCTAACGTCATGTG
GCTTTGGAGTATATGCAATGGACTGGATTGGTCATGGTGGGAGTGATGGTCTGCACGGTT
ATGTTCCTTCTCTGGACTATGTTATAAAAGACATGGAAGTACTTCTTGATAAAATTATGC
TGGAGAATCCAGATGTTCCTTGTTTTCTACTCGGCCACTCCACTGGTGGAGCTGTTGTTT
TGAAGGCGTCGCTGTACGCCCATATCAGAACCAGACTGGAAGGGATCATCCTGACTTCAC
CAGCTGTGCGTGTAAAACCAGCGCATCCGATAGTCGGGGCAGTGGCACCGATATTCTCTC
TGATTGCACCCAAGTTCCAATTCAAGGGAGCCAACAAGCGGGGCATCCCGGTGTCCCGCG
ACCCTGCGGCGCTGCTAGCAAAGTACTCTGACCCGCTGGTCTACACGGGGCCGATCAGGG
TCCGTACGGGCCACGAGATCCTGCGCATCTCCTCCTACCTGCTGCACAACCTGAAGAAGG
TGACTGTCCCGTTTGTGGTCCTGCACGGCACGGCGGACCGGGTGACGGACCCGCTGGCCT
CGCAGGAGCTCTACAGGGAGGCGGCGTCGAGGCACAAGGACCTGCGGCTGTACGAGGGGT
TCCTGCACGACCTGCTCTTCGAACCCGAGCGCGACGAGATCGCCGCCGACATCATCAGGT
GGATGGACCGGACGCTCGGTCTGCAGGCCGTATGAAGGGTAGCTGTTGTCTGAAGATGGG
GGAGGAAGGAGGTGAACATAGTGTGCGGATCGCTCCGATCACAGCCATGGGCATCATGGC
ATGACATGGCATGGCAAGACATGCATGAT

Homology of Contig U35_1734 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g10250.1	396	0.0	protein\|hydrolase, alpha/beta fold family domain containing protein, expressed
Brachypodium v1_2	Bradi2g06120.1	401	0.0
Arabidopsis v10	AT5G11650.1	390	2e-140	alpha/beta-Hydrolases superfamily protein \| chr5:3745069-3746816 FORWARD LENGTH=390