barSeed - Barley Seed Development Database

Probe CUST_4700_PI390587928

Source Contig U35_1735

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4700_PI390587928	Hv_44K_v2	GTTTCTAGCTACTCAACGTTTGTTTACCTACCTGGCTCGCTCATAGTTTGACTTTGTTTT	1833	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.118	1.243	1.219	1.030	0.508	0.530
Raw	9542.250	16181.790	14311.900	18495.683	3295.330	3714.227

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370017	2710	2e-24	2574 - 2633	100	60 / 60	plus	ABC04761
MLOC	MLOC_12198.4	1456	2e-24	1302 - 1361	100	60 / 60	plus	ABC04761
MLOC	MLOC_12198.3	2918	2e-24	2764 - 2823	100	60 / 60	plus	ABC04761
MLOC	MLOC_12198.2	3011	2e-24	2857 - 2916	100	60 / 60	plus	ABC04761
JLOC1	JLOC1_8178.1	3128	8e-25	2817 - 2876	100	60 / 60	plus
Harvest21	ABC04761	2031	3e-25	1834 - 1893	100	60 / 60	plus	ABC04761
Harvest35	U35_1735	2069	3e-25	1834 - 1893	100	60 / 60	plus

Contig Sequence (2069 bp)

>U35_1735 2069 Hv_44K_v2
GCTCCTCTCTCCCCTCCGATCACCCGCTCCCCTCTCTCTCCGATGAGCTGCTCGCCGCAC
TCAATCATGGCGGCCGACCCCTCCGCGGCTGCGGCGCCCGCCGACCCCGATGACACAGCA
GCCAGGCGTGCAACAGGTCAATGTGATGCATCCATTAGCCACGACAGGGGTTAACAGGTT
CTTGCTCCCGGTATCAGAATGCGAGTGCACGCTCAGCACGCTGCTGGACGAGTTGCAGCC
TGACCAGTGGCCTGTTGAGGCTGGGAACCGTGCCATCAGGTGCACGGGTGTTGCGCTAAA
TGTGGCGGCTGGGTTGCTTGGGGCGTGCTTGCCTGGGACTGGGGCAAGGATTATTGCGCT
ACTTGGTGGGCCATGTACCGAAGGTCCTGGAGTGATTGTGTCAAAAGATTTGTCAGAGCC
AGTTAGATCACACAAGGATCTTGACAAGGATGCGGCGCCTCATTTCCAGAAAGCCGTCAA
ATTTTACGATGGCCTTGCCAAACAACTGGTCAGTCAAGGTCATGTTCTAGATGTGTTTGC
ATCTGCTCTTGATCAGGTTGGACTAGCTGAGATGAAGCTTGCTATTGAGAGAACATGCGG
CCTTGTTGTCTTATCCGAGAGTTTTGGGCATTCCGTGTTTAAGGATTCTTTTAAACGCAT
TTTTGAGGGAGGTGAACATTCATTGGGCCTGTCATTTAATGGCACATTTGAAATAAACTG
TTCGAAGGACATTAAAGTTCAGGGTGTTATTGGACCGTGTACATCTTTGGAGAAGAAAGG
AGCTTTATGCGCAGACACAATTATCGGTCAGGGAAGCACAACAGCATGGAAAATGTGTGG
GCTTGATAGGAATACTTCACTTACAGTATTTTTTGATGTCTCACCGAGTGAACGCTCTGG
GCAACCAGGTCATCAAAATCCTGATTTGTACATACAGTTTGTAACCAGTTACCAACACCC
GGAAGGTCAAATGAGAATAAGAGTTACTACTGTATCCAGAAAATGGGTGGATGGTTCTAC
CAATACCGAGGAACTAGTCGAAGGATTTGACCAGGAAACTGCAGCTGTTGTGTTGGCAAG
ATACATTTCCTTGAAAATGGAAATAGAGGAAGAGTTTGATGCAACACGGTGGCTCGATAG
ATCTCTCATACGTCTATGTTCAAGATTTGGGGATTATCGGAAGGATGACCCCTCTTCATT
TAGCCTACATTCTAATTTCTCACTGTTTCCTCAGTTTATGTTTAATCTCCGGCGTTCGCA
ATTTGTTCAGGTTTTTAATAACAGTCCAGATGAAACAGCCTATTTCCGAATGTTACTCAA
CCGAGAGAGTATCACTAATTCAGTTGCAATGATTCAGCCGTCATTAATTTCATTTTCTTT
CGATTCACCTCCATCCCCTGTATTCCTCGATGTGGCATCAATAGCAGTAGATCGTATACT
GCTGCTTGATGCATACTTCAGTGTTGTCATCTTCCATGGAATGACAATCGCTCAGTGGAG
AAACATGTGTTATCAGAATCAGCCGGAGCATCAGCAATTCGCACAATTATTACAAGCTCC
TCAGGAGGAGGCCCAGGTGATAATAAATGGTCGATTCCCAGTTCCTAGACTAGTCGTCTG
TGACCAGCATGGCTCCCAGGCAAGGTTCTTGTTAGCAAAACTAAATCCATCAGCCACATA
TAATTCAGCACATGATGTTCCACCAGGTTCTGACATCATATTCACCGATGATGTGAGCTT
CCAGGTCTTTTGTGAGCATCTACAAAGGTTGTCTGTTCAGTCGTAAGGAAATGCATGCAT
GCATGCATGCAGAGTTGTACTCCCAAATTGATTGTTTCTAGCTACTCAACGTTTGTTTAC
CTACCTGGCTCGCTCATAGTTTGACTTTGTTTTTTTGGCCATGTGTCTTTTCATCATGAA
TTCAACTTCTTCTGGAAATAAACTAAAAAAATCATTTGTAAGGAAAAAAAAAAAAAAAAA
GCCCGTCCTTTATTATATACTCCCTTCATTTTTGAATATAAGTCTTTTTAGATGTTTCAT
TAGCCGACTGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_1735 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os11g24560.1	794	protein\|protein transport protein, putative, expressed
Brachypodium v1_2	Bradi4g19570.1	788
Arabidopsis v10	AT4G14160.1	773	Sec23/Sec24 protein transport family protein \| chr4:8167574-8173026 FORWARD LENGTH=773