barSeed - Barley Seed Development Database

Probe CUST_4699_PI390587928

Source Contig U35_1736

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4699_PI390587928	Hv_44K_v2	CAATGTGATGCATCCATTAGCCACGACAGGGGTTAACAGGTTCTTGCTCCCGGTATCAGA	803	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370017	2710	2e-24	879 - 938	100	60 / 60	plus	ABC04761
MLOC	MLOC_14394.1	945	2e-24	521 - 580	100	60 / 60	plus	ABC04761
JLOC1	JLOC1_9836.1	972	8e-25	521 - 580	100	60 / 60	plus
Harvest21	ABC04761	2031	3e-25	139 - 198	100	60 / 60	plus	ABC04761
Harvest21	ABC04762	862	1e-24	804 - 862	100	59 / 59	plus
Harvest35	U35_1736	863	3e-25	804 - 863	100	60 / 60	plus
Harvest35	U35_1735	2069	3e-25	139 - 198	100	60 / 60	plus

Contig Sequence (863 bp)

>U35_1736 863 Hv_44K_v2
CAGGAAACAACCCGCAGGCGCAGCTCTCCATCTCCCCTCCTCTCTCCCCTCCGATCCACC
CGCTCCCCTCTCCTCCCCGATAGCTGCTCGCCGCGCTCAATCATGGCGGCCGACCCCTCC
GCGGCTGCGGCGCCCGCCGACCCCGATGGCCCGGACGCGGTCCGCTTCACATGGAACGCC
TGGCCGCGGTCCAAGGTTGAAGCCAGCCGCTGTGTCGTCCCGCTCGCCGCCGCCATCTCC
CCGGTCCGCTCCCCCGAGTCCCTCGCGTCGCCGCCCCTTCCCTACCCGCCACTCCGCTGC
AAGCCACCTTGCTCTGCGCTCCTCAACCCCTTCGCCCGTGTCGACTTCGCGGCCAAGATC
TGGATCTGCCCGCTCTGCTTCTCGCGCAACCACTTTCCCCCGCACTACGCCGGCATCTCC
GAGAACAACGTGCCCGCCGAGCTCTTCACACAATGCTCCACCGTCGAGTACCTCGTCGCC
GCACCCCCGGGATCGCCTGCACCGCTGCCGCCAGTGTTCTTGTTCGTCATCGACACCTGC
GTCATCGAGGAAGAACTGGAGTACGTCAAGCTGTCCATGCGGAAGGCGGTCGCGCTTCTG
CCAGAGCACGCACTTGTCGGCCTGGTGACCTTCGGGACGCAGGTGCATCTGCACGAGCTT
GGGTTCTCCGAGCTCAGCAAGATCTACGTGTTCCGGGGGAGCAAGGAGATCTCCAAAGAG
CAGATTTTGGATCAGCTTGGGTTATCAGTCGGGGGGCGGCCAGGGTTCCCAAAGATGACA
CAGCAGCCAGGCGTGCAACAGGTCAATGTGATGCATCCATTAGCCACGACAGGGGTTAAC
AGGTTCTTGCTCCCGGTATCAGA

Homology of Contig U35_1736 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g24560.1	794	4e-115	protein\|protein transport protein, putative, expressed
Brachypodium v1_2	Bradi4g19570.1	788	7e-120
Arabidopsis v10	AT1G05520.1	783	3e-74	Sec23/Sec24 protein transport family protein \| chr1:1631126-1635703 REVERSE LENGTH=783