barSeed - Barley Seed Development Database

Probe CUST_4689_PI390587928

Source Contig U35_1746

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4689_PI390587928	Hv_44K_v2	CAACAGATACCTTGTTCCAATCATATCAACTATTTTTCCTTCCATTGTGCTTCGTCTCGT	1691	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.423	2.903	1.025	0.747	0.377	0.704
Raw	117.220	227.183	65.465	80.055	13.260	27.626

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_35464.1	2284	8e-25	2186 - 2245	100	60 / 60	plus
Harvest35	U35_1746	1794	3e-25	1692 - 1751	100	60 / 60	plus

Contig Sequence (1794 bp)

>U35_1746 1794 Hv_44K_v2
CACGAGGATCGATCAAGCGAGCCCGCGCCGCCGCGGGGCTCCGGCGGATGGGCGTCGGCA
AGGGCGACGTGGTCATGAACCTGCTCCGCAACTGCCCCGAGTTCGCCTTCTCCTTCCTCG
GCGCGGCCCGCCTCGGCGCCGCCACCACCACCGCCAACCCCTTCTACACCCCGCACGAGA
TCCACCGGCAGGCGGACGCGGCCGGCGCCATGCTCATCGTCACCGAGGCCTGCGCCGTCG
ACAAGGTGCTGGAGTACGCGGCCGCCAAGGGCCTGCCCGTGGTCACCGTGGACGGGAAGC
GCGACGGGTGCGTCGAGTTCGCCGAGCTGATCGCCGGCGAGGAGCTGCCGCAGGCCGAGG
AGGCCGGGATCCACCCCGACGACGTCGTCGCGCTGCCATACTCCTCCGGCACCACCGGGC
TGCCCAAGGGCGTCATGCTCACGCACCGCAGCCTCATCACCAGCGTCGCACAGCAGGTGG
ACGGAGAGAACCCGAACCTGTACTTCAGGAAGGAGGACGTGCTGCTGTGCCTGCTGCCGC
TGTTCCACATCTACTCGCTCAACTCGGTGCTGCTGGCGGGGCTGCGCGCCGGGTCGGCGA
TGGTGATCATGCGCAAGTTCGACATCGGCGCGCTGGTGGAGCTGGTGCGCGCGCACGGCA
TCACGGTGGCGCCCTTCGTGCCGCCCATCGTGGTGGAGATCGCCAAGAGCCCCCAGGTCA
CCGCCGGCGACCTCGCGTCCATCCGCATGGTCATGTCCGGCGCCGCGCCCATGGGCAAGG
AGCTGCAGGACGCCTTCATGGCCAAGATCCCCAACGCCGTGCTCGGGCAGGGGTACGGGA
TGACGGAGGCCGGGCCGGTGCTGGCCATGTGCCTGGCGTTCGCCAAGGAGCCGTTCAAGG
TCAAGTCCGGGTCGTGCGGCACGGTGGTGCGCAACGCCGGGCTCAAGATCGTCGACCCCG
ACACCGGCGCCTCCCTCGGCCGGAACCAGCCCGGCGAGATCTGCATCCGCGGGGAGCAGA
TCATGAAAGGTTACCTTAACGACCCAGAATCCACCAAGAACACCATCGACAAGGATGGCT
GGCTGCACACCGGAGACATCGGCATCGTCGACGACGACGACGAGATCTTCATTGTTGACA
GGCTCAAGGAGATCATCAAGTACAAGGGCTTCCAGGTGGCGCCGGCAGAGCTCGAGGCCC
TCCTCATCACCCACCCGGAGATCAAGGACGCCGCCGTCGTATCGCTGAAGGACGATCTTG
CTGGCGAAGTCCCGATCGCCTTCGTTATGCGGATCGAAGGCTCTGAAATCACCGAGGATG
ACATCAAAAAATTCGTCGCGAAGGAGGTTGTTTTCTACAAGAGGATCCACAAGGTCTTCT
TCACCGACTCAATCCCCAAGAACCCTTCAGGCAAGATCCTGAGGAAGGACTTGAGAGCCA
GGCTCGCCGCTGGCATCCCCAGCTAAGCGCTGCGGCCGCCCTCCGCTTCTCAGGTACTCA
GCCAGCCAGCAGGGTGCTGGTATAGATCATGTAATATTGGTGAATCTCCACGAAATGGTC
GGAGGAGGTTGAGTTTGTTGGTTCTTCCTGCTCATGTAATGTTGATAAAATGAAATGATA
TATGTAGATGTGTTGTTTTTGAGCATAAGAACAAGGCTGGTTTCCAAAGGGTATAATGTA
TACTTCTTTTCCAACAGATACCTTGTTCCAATCATATCAACTATTTTTCCTTCCATTGTG
CTTCGTCTCGTATACATGGTTTCAGTCAAAAAAAAAAAAAAAAATTATGAAAAA

Homology of Contig U35_1746 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g08100.1	555	protein\|AMP-binding domain containing protein, expressed
Brachypodium v1_2	Bradi3g05750.1	554
Arabidopsis v10	AT1G51680.1	561	\| Symbols: 4CL1, 4CL.1, AT4CL1 \| 4-coumarate:CoA ligase 1 \| chr1:19159007-19161464 REVERSE LENGTH=561