barSeed - Barley Seed Development Database

Probe CUST_4685_PI390587928

Source Contig U35_1750

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4685_PI390587928	Hv_44K_v2	ATGAGGACATATCATGTATACATTAAAGACCGCCCGCCAAAAAACAAATTTTGCATCTGG	2196	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.799	1.412	0.956	0.958	0.472	0.493
Raw	3849.997	4585.987	2804.843	4403.010	779.430	870.083

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37457.3	2439	2e-24	2254 - 2313	100	60 / 60	plus	ABC04653 ABC05574
MLOC	MLOC_37457.2	2446	2e-24	2276 - 2335	100	60 / 60	plus	ABC04653
JLOC1	JLOC1_24259.1	2402	8e-25	2183 - 2242	100	60 / 60	plus
Harvest21	ABC04653	2278	3e-25	2197 - 2256	100	60 / 60	plus	ABC04653
Harvest35	U35_1750	2296	3e-25	2197 - 2256	100	60 / 60	plus

Contig Sequence (2296 bp)

>U35_1750 2296 Hv_44K_v2
CCCCCCGCGTCCTTCCGCCCGCCGCCCGTCAAGGTCGACGCCGACGACGCCGACGACGGC
CGCAAGCGCGTCACCATCTTCTTCGGCACCCAGACCGGCACCGCCGAGGGCTTCGCCAAG
GCTATGGCGGAGGAGGCCAAGGCGCGGTACGAGAAGGCCGTCTTCAAAGTGGTGGATCTG
GATGACTATGCTGCCGAGGACGACGAGTACGAGGAGAAGCTCAAGAAGGAAACGTTTGCG
CTATTCTTCTTAGCAACATATGGCGATGGGGAACCCACTGATAATGCGGCAAGATTCTAC
AAATGGTTCACTGAGGGTAAGGAGAAGGAGGTTTGGCTGAAGGATTTTAATTATGCTGTA
TTTGGCCTTGGCAACAGGCAATACGAGCATTTTAATAAGGTTGCAAAGGAGGTGGATGAG
TTACTGCTGGAGCAGGGTGGCAAGCGTCTTGTTCCTTGTGGCCTTGGTGATGACGATCAG
TGCATTGAGGATGACTTCACCGCATGGAAAGAACTAGTATGGCCAGAATTGGACCAACTG
CTCCGTGATGAAGATGATACTACTGGTGCAACCACTCCTTACACTGCTGCAATACCTGAA
TACAGAGTTGTATTTATTGATAAATCAGACTTAGAGTTTGAAGATAAATCCTGGACACTT
GCCAATGGCAACGGTGTTATTGATGCCCAACACCCTTGCAGGTCCAATGTTGCTGTTCGG
AAGGAACTCCATAAACCAGCTTCGGATCGCTCTTGTATTCATCTGGAATTTGATATTTCA
GGCACTGGTCTTGTGTATGAAACTGGAGATCATGTTGGCGTTTATTCAGAAAATTCTATC
GAGACAGTGGAGCAGGCTGAAGCGCTACTTGGTCTTTCCCCAGACACACTATTCTCCATA
CATGCAGATGCCGAAGATGGATCTCCTCGTAAAGGCGGGGGTTCCTTGGCTCCACCATTC
CCATCTCCTTGTACCTTACGAACTGCACTTCTACGATATGCTGACTTACTCAATTCGCCA
AAGAAGGCTGCTTTGACTGCTTTAGCTGCTCATGCTTCTGACCCAGCTGAAGCTGAACGA
CTGAGGTTTTTGGCTTCTCCTGCTGGAAAGGATGAGTATGCTCAATGGATAGTAGCTAGC
CAGAGGAGCCTTCTTGAAGTTATGGCTGCATTCCCTTCAGCTAAACCGCCCTTGGGGGTA
TTCTTTGCAGCGGTAGCTCCTCGTCTACAGCCACGATTCTACTCCATATCATCATCTCCA
AAGTTGGCTCCCTCTAGAATTCATGTAACGTGTGCATTAGTTTATGGGCCTACACCAACA
GAAAGGATCCACCAAGGAGTTTGTTCGACATGGATGAAGAACACACTTCCACTGGAATAT
AGCGAAGAATGCAGTTGGGCACCGATTTTTGTGAGGCAGTCAAATTTTAGGTTGCCTGCA
GATCCATCCACTCCCATCATCATGATTGGTCCTGGGACTGGACTAGCACCTTTTAGGGGC
TTTTTGCAGGAAAGACTAGCTCTAAAAGAATCTGGAGTTGAATTGGGCAGTTCAGTGCTC
TTCTTTGGATGCAGGAACCGCGACATGGACTATATATACGAGGATGAGTTACAAAATTTC
CTTCAGGAAGGGGCACTCTCCGAGCTAATTGTCGCGTACTCTCGTGAAGGACCAACCAAA
GAATATGTGCAGCATAAGATGATTGACAAGGCCACCGAGATTTGGAACGTCATCTCTCAA
GGTGGTTACATATATGTTTGTGGTGATGCCAAGGGCATGGCGAAGGATGTACACAGGGTT
CTTCACACAATAGTTCAGAAGCAGGGATCTTTGGATAACTCGAAAACCGAGCTGTATGTA
AAGAACCTACAGATGGAAGGCAGGTACCTCCGTGATGTGTGGTAACAACACCCCCAGACA
GGCATTGCTAGCCCTAGCGTCGTGTAGAAGTAAACAAGATGGCGTCTGTATGGGCATGGT
GGATGCCAATCCCAATCGTGAGTTTCCTGCATCCATCCCATTGCCCCCGGAATTGGAGTT
AATCGGTGTAATTCTTTGACATCTAACATGGTTCTAATATTTATTGTATGGATGGATGGT
TGAAAGAATAAGTGCTGTTGTAGATTATTAGTAGAACTTAAAATACCCCTGAGAAAATTG
TAGCGGGGGGATGTGAATCATACAGTTTGAGATGAGATGAGGACATATCATGTATACATT
AAAGACCGCCCGCCAAAAAACAAATTTTGCATCTGGTTAAAAAAAAAAAAAAAAAATGTC
TAGGGCGCCAAAAAAA

Homology of Contig U35_1750 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os04g55960.1	696	protein\|NADPH reductase, putative, expressed
Brachypodium v1_2	Bradi5g24370.1	693
Arabidopsis v10	AT4G30210.1	712	\| Symbols: ATR2, AR2 \| P450 reductase 2 \| chr4:14796900-14800578 FORWARD LENGTH=712