barSeed - Barley Seed Development Database

Probe CUST_4684_PI390587928

Source Contig U35_1751

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4684_PI390587928	Hv_44K_v2	TACTTATGTGTGATTCAAGGCCCTGAAATGGAGGTTCCTGATGCCAAAACCCACAAAAAA	3417	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.819	2.184	1.232	0.672	0.411	0.351
Raw	33.151	55.165	30.717	27.988	4.296	4.315

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_1751	3486	3e-25	3418 - 3477	100	60 / 60	plus

Contig Sequence (3486 bp)

>U35_1751 3486 Hv_44K_v2
AGAAAAGGCCGCCTTTTTTTAGGCCCTCCGGTCACCGCGGCTCACAGGTGCCGCTCCCCC
ATGCTCGCCCACCGTCGTTAACGTCACCCTCACACCCGTCCTCTTCGCCATCTCTTTGGC
ATCGTCCCTCCCTCCCGTGCCTCCATCCATGCTCTCGCTCTCCTGAGCCTCCTCCTCCTC
CTCCTCCTTGCTCTGCCGCCGATTCCATCCCCGCCCGTGGCCGCCATTGGCGCCGTCCCT
GCTCGCTGAAGAGATGGGGAAGAACACGGTGACCGTGATCTTCAAGCTGCCGTACTACAC
GCAATGGGGGCAGAGCCTCGTCATCGCCGGCTCCGCGCCGGCGCTCGGGTCCTGGAGCGT
CAAGCAGGGGCTGTCCCTGAGCCCGGTTCACCAGGGGAACGCGCTGGTCTGGTGTGGCCA
GGTTTCGGTCGCCGCCGGCTTCACATGTGAGTACAGCTACCATGTGGTGGACGACCACAA
GAACGTTCTCAGATGGGAGTCCGGGGAGAAGAAGAAGCTCGTGGTGCCCGAGGGCGTGCA
GGACGGCGAAGTCGTCGAGGTCCGCGACTGGTGGCAGGATAATTCTGAAGCTCTTTTCCT
TCGAAGTGCATTCAAGAATGTTATCTTCAGCGCAGCTGACAACGCTAAAAGAGAATTGCA
GTCTTCTTCCCTCACCAAAAGTTTGGATCCTGAAGATACTGTCGTGCAATTTATTATCAG
TTGTCCTCGGCTAGCATCTGGCTCTACTGTTGTCGTCACAGGAAGTAACCCTGCGGTAGG
AAATTGGAAAGCTCAAGATGGCCTCAAGCTCAACTATGTTGGAGATTCCATTTGGAAAGC
CAACTGTGTGTTGCGGAAGTCTGAGTTCCCAGTAAAATATAAGTACTGTCAAGTTAGTGA
AGCAGGAGTCACTTCATTGGAGTTCGGCCCAAACAGAGAGGTTGATGTGGACTTATCATC
ACCCAAGCCATCCAGATACGTCTTATTATCTGATGGCTCCCTCCGGGAAGCACCATGGAG
GGGTGCTGGTGTTGCCGTACCAATGTTCTCAATCAGGTCAAATGAGGATCTTGGTGTTGG
AGAATTCCTAGATCTTAAACTTCTTGTTGACTGGGCAGTCAACTCGGGTTTTCATCTTGT
TCAGCTCCTTCCTATCAATGATACTTCTGTTCATAAGATGTGGTGGGATTCATATCCATA
TAGCTCACTCTCCGTATTTGCATTGCACCCCTTGTACCTGAGAGTGCAGGCACTTTCCGA
TGCTATTCCAGCGGATGTTAAGGAAGAGATTTCGAAGGCAAAGAAGGAGTTGGACAAAAA
GGACGTCGACTATGAGGCAGCGCTGGCCACGAAACTCACAATTGCCAAAAAAATATTTAA
TTTAGAAAAGGACAAAGTGCTAAATTCAGCTCCGTTCAAGCAGTTCTTATCTGAAAATGA
GGAATGGTTGAAACCATATGCTGCATTTTGCTTTCTTCGGGATTTCTTCGAGACATCAGA
TCACAGTCAGTGGGGTCGGTTTTCTCAGTTTTCCAAGGAGAAGCTTGACAAGCTAGTCGC
GCCAGATGCTTTGCACCATGATATTATACGCTTTCACTACTATGTCCAATATCATCTATT
TACACAATTATCAGAGGCAGCTACATATGCAAGGAAGAACAAGGTTATTCTGAAAGGAGA
TTTACCTATTGGTGTTGATAGGAACAGTGTGGATACTTGGGTATACCCTACACTATTTCG
CATGAATACCGCTACTGGTGCACCTCCAGATTACTTTGACAAGAATGGACAAAATTGGGG
TTTTCCTACGTATAACTGGGAGGAGATGTCAAAGGATAATTATGGGTGGTGGCGAGCTCG
TCTGACACAGCTATCAAAATTCTTCACAGCGTATAGGATAGACCATATTTTGGGTTTCTT
TAGGATATGGGAGCTTCCAGACCATGCTGCCACAGGTTTGGTCGGAAAATTTAGACCTTC
AATCCCTCTTAGTCAGGAGGAGCTTCTAGGTGATGGTATCTGGGATTTTGATCGGATGAG
CCGCCCATATATTCGTCAGGACATGCTGGAGGAGAAGTTTGGATCTCTTTGGACAGTTGT
TGCAGCCAACTTTCTGAACGAGTATCAGAAACACTGCTACGAGTTCAAAGAGGAATGCAA
CACCGAGAAAAAGATTATTACAAAGGTTAAAACCAGTCCTGAAAAATCACTCTGGCTGGA
GAAAGAAGACAGTATTCGGCGTGGTCTGTTCGATCTTCTACAGAATATAGTCCTCATCAG
AGATCCTGAGGACTCCACAAAGTACTATCCCCGTTTTAACCTGGAGGATACTTCAAGTTT
TAGGGATTTAGATGAACATAGCAAAAATGTCCTTAGAAGATTATACCATGACTATTATTT
CGTTCGCCAAGAAAATCTGTGGAGACAAAATGCGCTGAAGACTCTGCCTGTTCTATTGAA
TTGTTCGGATATGTTGGCATGCGGGGAAGATCTTGGTCTTATTCCTGCTTGTGTTCACCC
TGTTATGCAAGAACTCGGGTTGATTGGATTGCGTATCCAGAGAATGCCTAGTGAACCAGG
CTTGGAATTTGATATCCCGTCCAACTACAGCTATATGACGGTTTGTGCTCCCTCATGTCA
TGATTGCTCCACATTACGTGCTTGGTGGGAAGGAGATGAAGGGACAAGAAGTCGTTTTTA
CAAGACCGTAATTGGCAGCGACAAAGAGGCCCCATCTCGTTGCACCCCAGAAGTAGTGCA
CTTCATTGTTCAGCAGCATTTCGATGCACCATCAATGTGGGCAATCTTTCCGCTACAGGA
TCTGCTCGCGCTGAAAGACAAATACACCGCAAGACCAGCAGCGGAGGAAACAATCAACGA
CCCCACTAACCCGAAGCATTACTGGAGATTCCGCCTACATGTGCCACTGGAGTCCATGCT
GGAGGACAAGGACATCCAAGCGACCATCAAGGAGCTCGTCACAAGCAGTGGGAGGTCGTT
CCCTGGCAAGACGGTGGACAAGGCCCAGCCGAACGCCAAAAAATCGTAGGAACAACAAAG
GACCACAAAGAACGGTCAGTCATCGCCGGGCGGGATCATGATCACGAGAAGAAGAGAGGG
AGATATAGGATAAATAAGGCGGTGTATTTACCGCCATGTCCGATGAGCTGATGTTGTTTC
AGCTAGAGAAAAAATCTTTACGCCCGCTCATAATTCCTTTTTCGACGCCCTGGAGAATAA
TAACTACTGGTATATGATTCTATATCAAAGCCGGCTTGTGAAATAAAAAAAAAAAAAAAA
ACCCAGTTTTTTGTCGACGAAAAAAAAAAAAAAAAATCTTCCTCCACGGCTAGCTTTCAC
TTGTTATTTTTTCTCCTTGGCTAAGAGAAAACCTGTTCTCTTTTCTGCATATTTTTCTAC
TTATGTGTGATTCAAGGCCCTGAAATGGAGGTTCCTGATGCCAAAACCCACAAAAAAAAA
AAAAAA

Homology of Contig U35_1751 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os07g46790.1	947	protein\|4-alpha-glucanotransferase, putative, expressed
Brachypodium v1_2	Bradi1g18650.1	930
Arabidopsis v10	AT2G40840.1	955	\| Symbols: DPE2 \| disproportionating enzyme 2 \| chr2:17045368-17050779 FORWARD LENGTH=955