barSeed - Barley Seed Development Database

Probe CUST_4673_PI390587928

Source Contig U35_1762

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4673_PI390587928	Hv_44K_v2	CTAGCTGTAAGTGATTAGTATTGTAGTGGACATGTCACTGAGTTTATCATATGACTGATA	1089	GeneList: lightsteelblue1 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.808	3.245	1.376	0.485	0.143	0.157
Raw	1641.833	1300.187	464.240	261.167	26.472	32.605

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57260.1	1388	2e-24	1148 - 1207	100	60 / 60	plus	ABC09093 ABC29436
JLOC1	JLOC1_37081.1	1498	8e-25	1146 - 1205	100	60 / 60	plus
Harvest21	ABC29436	152	3e-25	32 - 91	100	60 / 60	minus	ABC29436
Harvest35	U35_1762	1181	3e-25	1090 - 1149	100	60 / 60	plus

Contig Sequence (1181 bp)

>U35_1762 1181 Hv_44K_v2
CTGTTGGCCTACTGAGCACTGCACTGACACTCCGAGAACAACAAACACACACACACAAAC
CAGCACAAGTCCTCACTCACCACTGACGCTCCGAATCTAGCGGCGGCATATGGCCTCCAC
GATGCCGCGCCACATCGCGCTGCTGTTGCTCCTGCTCCTCGTGGCGTCCACGCGCGCGGC
GTCCGCGGCCGGCGCCGGCGCGTGCGCGGCCGAGAAGTTCCCGGCGGGGAAGACGTACGC
CAAGTGCGAGGACCTCCCGCAGCTGGGGGCCGCGCTGCACTGGACCTACGACGAGTCCAA
GTCGTCCCTCTCGCTGGCGTTCGTGGCCGCGCCGGCGGGGGCCAACGGGTGGGTGGCCTG
GGCGCTCAACCCCACGGGCGAGGGCATGGCCGGCGCGCAGGCGCTCGTGGCGCTCAAGGG
CTCCGGCGCCGCCGCGCCCACCGTCAGGACGTACAACATCACCGGCTACGTGCCGCTCGG
CAAGGCCTCCACGCCCATCGCGTTCCCGGCCACCGACCTCGCCGCCGACTCCGGCAGCGC
CGGCAAGATCCGGCTCTACGGCAAGCTGCAGCTGCACAGCGGCATGAAGGCCGTCAACCA
TATATGGCAGGTCGGCACCTCCGTCACCGCCGGGGCCCCCGACAAGCACGCTTTCGCCCC
CGGCAACCTCGCCTCCAAGTCCAAGCTCGTCCTCTCGGGCAAAGCGGCTTCCGCGACCTC
GCCTTCGCCGTCGCCCGCCCCCATGGCCGGTGGCCCGTCCGGAAGCGACGCCGGCGCGGC
GGCGACCACGGCGCCTTCTGCCGGCAAGTCCCCGTCGGCCGCGGCCGCGGCCGGCGTGTC
GGCGCCGGCACTCCTTGTGCTCGCGTTGATGGGCCTCCTCGCGGTAGTATGATGGCATGA
ATGAGTACTATAATTAGCGGAGGTGGCAGTGGGCATGGGGAGGAAGCATTTCCTGAACAA
TATAATGTTCCAATTTTGTCGATCGATCTTGCTTTTGCTGCCTATTCTTTTTCCTATTTT
CGATTGAAATAAAAGCTGGTTCTTGTAAAAAAAAAAAAAAAAGCTGTTGTTTGTAGGTAG
AAAGTAGTACTAGCTGTAAGTGATTAGTATTGTAGTGGACATGTCACTGAGTTTATCATA
TGACTGATATAATTTTTAGCATCAAAAAAAAAAAAAAAAAA

Homology of Contig U35_1762 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g41290.1	264	8e-88	protein\|AIR12, putative, expressed
Brachypodium v1_2	Bradi3g40830.1	258	2e-74
Arabidopsis v10	None