barSeed - Barley Seed Development Database

Probe CUST_4664_PI390587928

Source Contig U35_1771

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4664_PI390587928	Hv_44K_v2	GAACCATGCTGGTTGCACTTTGGTTCCTTTCTGTTTGATTGGAATGTCCTTGCTAAAAAA	1279	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.487	1.772	1.270	0.804	0.396	0.293
Raw	83.479	159.937	98.148	95.510	17.891	13.573

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62116.1	3375	9e-22	9 - 63	100	55 / 55	minus	ABC04648 ABC23742
Harvest21	ABC04648	1348	3e-25	1278 - 1337	100	60 / 60	plus	ABC04648
Harvest35	U35_1771	1350	3e-25	1280 - 1339	100	60 / 60	plus

Contig Sequence (1350 bp)

>U35_1771 1350 Hv_44K_v2
GCTCGACGCAGCGTGGGCGGTATATAGGGACGGGACGCCTCATCGCGCCGCCACAAACTC
CGTTCGCTCGTCCCCTCCACCCTCTCTCTCTCGTCGGTGCGAGCGCAGCTGTCGACGACC
CTCCTCCGACTCGTCGCTTCACAGGCTTGTGGTCAGCTTGACTGATTCCAAACAATGGCG
GAACACTTGGCTTCGATATTTGGTACAGAGAAAGACAGGGTCAACTGTCCATTTTACTTC
AAGATTGGAGCTTGTCGTCATGGCGATCGCTGCTCTCGCATCCATAACAGGCCAACCATA
TCACCTACTATTGTGCTCATGAACATGTATCAGCGCCCTGATATGATTACCCCTGGGGTT
GATGCTCAAGGCCAGCCGATAGATCCCCGCAAGATGCAGGAGCATTTTGAAGATTTTTAT
GAGGATATCTTTGAGGAACTGAGCAAGTTTGGTGAGATTGAGACCCTCAACGTCTGTGAC
AACCTTTCTGATCACATGATAGGCAATGTGTATGTCCAGTTCAGAGAGGAGGATCAGGCA
GCAGCAGCTCATACGGCCCTTCAGGGACGCTTTTACTCTGGTCGCCTAATAATTGTTGAC
TTCTCTCCCGTGACGGACTTCCGTGAAGCGACCTGCAGGCAGTATGAGGAGAATACCTGC
ACTCGTGGTGGGCACTGCAATTTCATGCATGTGAAGCAGATAGGCAAGGATCTCAGGAAG
AAACTCTTTGGGCGCTACAGGAGATCCCAACGAGGAAGAAGCCGCAGCCCAAGCCCACAC
CACAGGAGAGAGCGTCGTGACCGTGATGACTATCGTGGCCGTGATGATTTCCGTCGTGGT
GGTGGTGGCGGTGGTGGTGGACGGAGGGGTGGGAGCAGCAGGCATGAAAGGCATGACGAT
GGAGGAAGGCGTAGGTATGGAGGCAGCCCTCCGAGGCGTGCAAGAAGCCCTGTGAGGGAG
AACAGCGAAGAGCGCAGGGCCAAGATCGAACAGTGGAATCGTGAAAGGGAGACAAAGTAA
GGGATACTGACCACTATCACATCTGGGTGCGTCTTGTGCCGTTCTTCTATATATTGGACT
TCGTTCTGTAGTCGCTACTATTGATTTGCTGTTCTGTTCATGTAATTTAGGTGACTTCAG
AATGAGACTTTAAAATTGTCACTGTTGTGCTGCCGGAAACTTACAATTTAGCTACTTTAA
AAAAAAAAAAAAAATCCTGCTAGTTGTTTCCCATTTTTCTGACGCTGTCTGTTCTAACTT
TTCTGCCTGAAAGTGGTGCGAACCATGCTGGTTGCACTTTGGTTCCTTTCTGTTTGATTG
GAATGTCCTTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1771 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g48960.1	305	2e-120	protein\|splicing factor U2AF, putative, expressed
Brachypodium v1_2	Bradi2g46080.1	282	8e-133
Arabidopsis v10	AT1G27650.1	296	2e-116	\| Symbols: ATU2AF35A \| U2 snRNP auxiliary factor small subunit, putative \| chr1:9615152-9616042 FORWARD LENGTH=296