barSeed - Barley Seed Development Database

Probe CUST_4662_PI390587928

Source Contig U35_1773

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4662_PI390587928	Hv_44K_v2	CTCTTATCAGCTGAACTACACCTATAAAGTAACTAGTGGTATTGTACTATTTGTTGGAGT	1570	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.456	1.444	1.083	0.956	0.426	0.421
Raw	7633.287	11830.527	7764.893	10756.767	1688.790	1833.300

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248234.1	1693	2e-24	1590 - 1649	100	60 / 60	plus	ABC04969
MLOC	AK375229	2873	2e-24	2791 - 2850	100	60 / 60	plus	ABC04969
MLOC	MLOC_75322.3	1782	2e-24	1632 - 1691	100	60 / 60	plus	ABC04969
JLOC1	JLOC1_50243.1	2010	8e-25	1700 - 1759	100	60 / 60	plus
Harvest21	ABC04969	1739	3e-25	1571 - 1630	100	60 / 60	plus	ABC04969
Harvest35	U35_1773	1738	3e-25	1571 - 1630	100	60 / 60	plus

Contig Sequence (1738 bp)

>U35_1773 1738 Hv_44K_v2
GAAAGAAACCTCTCAAATCAAAACCCTAAGCAAGTCGTCGTCGTCGGCGGCGGCGCTAGC
ATCCCCTACTCACACCAGGCCCAGCCGCTATCCCACCCCTCCCCTCCCCTCCCCTCCCCT
CCCCTCCCCATCATGCTTCCCCAGATGCGCCCCCTCACTTCCCGCCCAGCCGTCCACGCC
GTCCACCGGCGCAGCTCCCCCGCGCCGCTCACTGTCGGACTTGGGCAGCATGGGCGAGTG
GCCCTCGCAAGGACGACGACGCCCGTGGTATGCCGCTCCGTCGCCAACCCGACTGCGAAT
CAGGGGGCGCCAGCGGTGGAGAGACCTTGGAAGCTTAGCGACGCTCGCCTGGTTCTCGAG
GACGGCTCCGTGTGGAATGCCAAATCCTTCGGTGCTTCCGGGACTCAAGTCGGCGAGGTG
GTCTTCAACACCTCATTGACAGGGTACCAGGAGATTTTAACTGATCCTAGCTATGCTGGT
CAGTTTGTTTTGATGACCAACCCTCATATTGGAAACACTGGTGTCAACTCTGGTGATGAA
GAATCCATAAAATGTTTCCTTGGTGGCTTAATCATACGAAGCCTAAGTATATGTACTTCC
AATTGGAGGTGCACGGAAACACTTGATGAATATTTGAGAAAGAGGAACATTATGGGCATA
TATGATGTGGACACACGTGCAATAACACGCAGGTTAAGAGAAGATGGCAGTCTCATTGGT
GTTCTAAGTACTGACCAGTCTCTGAAAGACGCGGAATTGCTGCAAATGGCCAAAAATTGG
AAAATTGTTGGTGTTGATTTGATAAGTGATGTTTCATGTGATGCTCCATATGAATGGTTA
GACAAGACCGGTTCAGGATGGGAGTTCAATGACAATCAGTCAAGTGAAACCTTTCATGTC
GTCGTGTATGATTTTGGAGTCAAGCATAACATTTTGAGACGCCTGGCATCATATGGATGC
AAAATAACAGTTGTTCCAGCAAGCTGGCCTGCTTCGGATGTACTTAATTTGAAGCCTGAT
GGTGTTCTTTTTAGTAATGGCCCTGGTGACCCAGCTGCAGTTCCATATGCCGTGAAAACA
GTACAAGAAATAGTAGGGAAGGTCCCAGTATTTGGCATTTGCATGGGACATCAATTGATT
GGTCAGGCTCTTGGTGGAAAGACGTTTAAAATGAAATTTGGTCATCACGGAGGAAACCAT
CCAGTTCGTGACAACAGGACCGGACGTGTAGACATCAGTGCACAGAACCATAACTATGCT
GTGGACCCAGAATCGCTCCCGGAAGGAGTACAAGTAACACACATCAACCTAAATGACCAG
AGCTGTGCTGGTCTTGTGTTCCCCAAGATGAAGCTTATGTCTCTCCAGTACCATCCGGAG
TCCTCCCCGGGGCCCCATGACTCAGACTTGGCGTTTGGTGAATTTGTGGAGCTGATGAAG
AACAACAGATTGTGAGTGGAAGAAAGGTTGGGATGCTTGGCGACCATCATGAGTTGCGAA
ACTTGTACTGTTGGCTTGTTGTTGGACCGTGCAGCGAGCTCCGAGGAGTTTGTATTTTTC
TTGTTGATTTCTCTTATCAGCTGAACTACACCTATAAAGTAACTAGTGGTATTGTACTAT
TTGTTGGAGTTTAAAGAATAAAATCCTTTGAGCTGTTGTATAAAAAAAAAAAAAAAAAAT
TGCTGTAGCCTGCAAGCTCAAATGTCTTTTTGTGACGTCGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_1773 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os02g47850.2	447	protein\|class I glutamine amidotransferase, putative, expressed
Brachypodium v1_2	Bradi3g05360.1	439
Arabidopsis v10	AT3G27740.1	430	\| Symbols: CARA \| carbamoyl phosphate synthetase A \| chr3:10281470-10283792 REVERSE LENGTH=430