barSeed - Barley Seed Development Database

Probe CUST_4661_PI390587928

Source Contig U35_1774

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4661_PI390587928	Hv_44K_v2	GGTGTTTGAAACGCTGTATGATGTTCCCGCTTATAACGAATAAAATGTTGATCATACCGA	1349	GeneList: paleturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	22.036	4.628	1.860	0.641	0.139	0.145
Raw	5192.390	1899.530	640.375	370.091	26.639	30.675

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54214.1	1492	2e-24	1355 - 1414	100	60 / 60	plus	ABC04566
MLOC	MLOC_54214.2	1002	2e-24	26 - 85	100	60 / 60	minus	ABC04566
JLOC1	JLOC1_34884.1	1892	8e-25	1365 - 1424	100	60 / 60	plus
Harvest21	ABC04566	1512	3e-25	1350 - 1409	100	60 / 60	plus	ABC04566
Harvest35	U35_1774	1509	3e-25	1350 - 1409	100	60 / 60	plus

Contig Sequence (1509 bp)

>U35_1774 1509 Hv_44K_v2
GGAGGTGAGACCCCAGCAGAGTGCAAACCAGAGGTCTTCCTTCTTCCCCCACCATGGCTG
CCATGTGGTCACCGATCATCGGTCTCCTCCTGCTCCTGCTCCCACTCGGGCCCTCCTCCG
CCATCAAGTTCCCGCTCGAAGGCAATGTGTACCCTGTTGGCCACTTCTATGCTACGTTGA
ACATTGGTGAACCCGCGAAGCCCTACTTCCTGGACGTCGACACTGGCAGCAACCTCACCT
GGCTGGAGTGCCACCACCCGGTCCACGGCTGCAAGGGCTGCCACCCGAGGCCACCACACC
CATACTACACGCCAGCAGACGGCAACTTGAAGGTGGTATGTGGCAGCCCGCTATGTGTTG
CAGTGCGCAGAGACGTGCCTGGGATCCCTGAGTGCTCCAGGAATGATCCACATCGGTGCC
ACTACGAGATTCAGTATGTCACCGGGAAGTCAGAAGGTGACCTCGCCACCGACATCATTT
CTGTCAATGGGAGAGACAAGAAAAGAATCGCTTTCGGATGTGGGTACAAGCAGGAGGAGC
CAGCAGACTCACCGCCCTCGCCGGTAGATGGCATCCTTGGACTCGGGATGGGAAAGGCAG
GCTTCGCCGCGCAACTCAAAGGGCATAAGATGATAAAAGAGAACGTCATTGGGCATTGCC
TCAGCAGCAAAGGAAAGGGCGTCCTCTACGTCGGGGACTTCAATCCGCCCACCCGCGGCG
TAACCTGGGCACCCATGAGAGAATCCTTGTTTTACTACTCACCTGGCCTAGCAGAGGTGT
TCATTGACAAGCAGCCGATAAGAGGGAATCCAACATTCGAGGCTGTGTTTGACAGCGGTT
CCACCTACACCCACGTACCTGCCCAGATATACAACGAGATTGTTTCAAAGGTTAGAGGCA
CTCTCAGCGAATCGTCACTTGAAGAGGTGAAGGGTCGTGCTCTGCCTCTATGCTGGAAAG
GGAAGAAGCCATTCGGATCTGTCAATGATGTGAAGAACCAATTCAAGGCACTGTCACTAA
AAATTACCCACGCCCGCGGCACCAACAACCTCGACATCCCTCCTCAAAACTACCTCTTCG
TGAAGGAAGACGGGGAAACGTGCCTGGCTATCCTCGATGCCTCGTTGGATCCTGTTCTCA
AGGAACTCAACTTCATCTTGATCGGAGCTGTGACGATGCAGGATCTGTTTGTGATATACG
ACAACGAGAAAAAGCAGCTCGGATGGGTCCGTGCGCAGTGCGACAGGGTGCAGGAGCTTG
AATCCGTCATCGATTCGCGTCTCTGAATAATGTTCCGGCCGACATAGCCAAGAGCCTTAA
CGAGAACAAATGAGTGCTCTCGTATATATGGTGTTTGAAACGCTGTATGATGTTCCCGCT
TATAACGAATAAAATGTTGATCATACCGAAAAAAAAAAAAAAAAATGGTATGATATTAGA
TTGAAAAAAAAAAAAAAAATCCTACTAAGAAGCAAACTTATTTTTCGGAAAGAAAAAAAA
AAAAAAAAA

Homology of Contig U35_1774 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g08200.1	411	6e-101	protein\|eukaryotic aspartyl protease domain containing protein, expressed
Brachypodium v1_2	Bradi4g23670.1	414	1e-97
Arabidopsis v10	AT1G44130.1	405	5e-87	Eukaryotic aspartyl protease family protein \| chr1:16787508-16789318 REVERSE LENGTH=405