barSeed - Barley Seed Development Database

Probe CUST_4651_PI390587928

Source Contig U35_13

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4651_PI390587928	Hv_44K_v2	GTGGTTCTTGTACTGTGTTGTTTTTGCCTAAGTTCAGGAGCTGATAAATACTTTTATCAA	545	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.264	0.913	0.767	0.838	2.293	3.076
Raw	4.436	28.959	20.434	36.535	33.915	50.177

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC00044	618	3e-25	14 - 73	100	60 / 60	minus	ABC00044
Harvest35	U35_13	618	3e-25	546 - 605	100	60 / 60	plus

Contig Sequence (618 bp)

>U35_13 618 Hv_44K_v2
GGAGGACGAGCAGGTGCGGCACAAGGTGGAGGCCCGCAACGCGCTGGAGAACTACGCGTA
CAATATGCGCAACACGGTGCGCGACGAGAAGATCGCGTCCAAGCTCCCCGACGACGACAA
GAAGAAGATCGAGGACTCCATCGAGGATGCCATCAAGTGGCTCGACGGCAACCAGCTCGC
CGAGGCCGACGAGTTCGAGGACAAGATGAAGGAGCTGGAGAGCATCTGCAACCCCATCAT
CTCCAAGATGTACCAAGGTGCCGGCCCGGGCGGCGCAGCCGGCATGGACGAGGACATGCC
CAGCGGCGGCGCGGGCGCCGGCGGTGGGAGCGGTGCCGGGCCCAAGATCGAAGAGGTGGA
CTAAGCGAGTCGTGACAGGTCCTGGGAGTGGACGCGGCTATGCCGTGCTTAGAATGTTCT
GATGCCTTCGTGTGGTTCTGTCGAATAACGAGGGTGCTTGGATGAGTTTGGCTATAACGA
TGTAGTACTAGGTCAGTAGAGGAAATAATAAAATAAACGTGTAAGAGCAGCAATGACACA
CACATGTGGTTCTTGTACTGTGTTGTTTTTGCCTAAGTTCAGGAGCTGATAAATACTTTT
ATCAAAAATAAAAAAAAA

Homology of Contig U35_13 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None