barSeed - Barley Seed Development Database

Probe CUST_464_PI415269222

Source Contig AU252275

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_464_PI415269222	Hv_44K_v2	AACATGACATCTTTGGAAGTCTTGGATGTCAACACCAACAGTTTGGAAGGTGAGCTGCCT	277	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69628.2	4202	2e-24	1223 - 1282	100	60 / 60	plus	ABC16556
MLOC	MLOC_69628.1	4855	2e-24	1662 - 1721	100	60 / 60	plus	ABC16556
JLOC1	JLOC1_46154.4	4685	8e-25	2896 - 2955	100	60 / 60	minus
JLOC1	JLOC1_46154.3	4668	8e-25	2879 - 2938	100	60 / 60	minus
JLOC1	JLOC1_46153.1	4900	8e-25	1731 - 1790	100	60 / 60	plus
JLOC1	JLOC1_46154.2	5170	8e-25	3381 - 3440	100	60 / 60	minus
JLOC1	JLOC1_46154.1	4291	8e-25	2502 - 2561	100	60 / 60	minus

Contig Sequence (540 bp)

>AU252275 540 Hv_44K_v2
GCTGATATCGTTCCAAGTGCAAATGAACTCCTTCACTGGGAAGATTCCACCGGAGCTCGG
CAAGGCAACCAAGCTGGGGATCTTGTATCTCTTCAGCAACAAGCTTAACGACTCTATCCC
GGCAGAGCTCGGGGAGCTGGTGAGCCTGGTTCAGTTGGATTTGTCCGTGAACTCTCTCAC
GGGACCGATCCCCAGCTCGTTGGGTAACCTCAAGCAGCTCAAGAGGCTGGCACTTTTCTT
CAACAATCTCACTGGCACTATCCCGCCGGAGATTGGCAACATGACATCTTTGGAAGTCTT
GGATGTCAACACCAACAGTTTGGAAGGTGAGCTGCCTGCCACCATCACAGCGCTCAGAAA
CCTTCAATACCTTGCCCTGTTCGACAACAACTTCAGTGGTACCGTACCGCCGGACCTTGG
AGAAGGGCTGAGCTTGACAGACGCGAGCTTCGCGAACAACAGCTTCTCTGGCGAACTGCC
GCAGAGATTGTGCGACAGTCACACGCTGCAGAACTTCACGGCGAACCACAACAACTTCAA

Homology of Contig AU252275 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g33080.1	1152	6e-86	protein\|leucine-rich repeat receptor protein kinase EXS precursor, putative, expressed
Brachypodium v1_2	Bradi3g28380.1	1213	1e-92
Arabidopsis v10	None