barSeed - Barley Seed Development Database

Probe CUST_4645_PI390587928

Source Contig U35_21600

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4645_PI390587928	Hv_44K_v2	TCGGCATAGTGTTTCGTTATATCCGAATCAACGCTTGAAACATTTAGTCCTGCCAAAAAA	683	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373431	1815	9e-22	1729 - 1783	100	55 / 55	plus	ABC14314
JLOC1	JLOC1_14322.1	978	5e-22	871 - 925	100	55 / 55	plus
Harvest21	ABC14314	709	3e-25	639 - 698	100	60 / 60	plus	ABC14314
Harvest35	U35_21600	754	3e-25	684 - 743	100	60 / 60	plus

Contig Sequence (754 bp)

>U35_21600 754 Hv_44K_v2
CACAAATCTTCAATGTTGTTGTTGAGATCACAAAGGGGAGCAAAGTCAAGTATGAACTTG
ACAAGAAGACTGGGATGATAAAGGTTGACAGGATTCTGTACTCGTCCGTAGTCTACCCAC
ACAACTACGGTTTCGTACCACGGACGCTGTGTGAAGATGGGGATCCAATTGACGTCTTGG
TCCTGATGCAGGAACCTGTCATACCTGGTTGCTTTCTTCGAGCTAAGGCTATTGGGCTTA
TGCCCATGATTGATCAGGGTGAGAAAGATGATAAGATCATTGCTGTTTGCGTTGATGATC
CCGAGTACCGTCATTTCAACGACCTTAAGGAGCTCTCCCCCCACCGCCTTGCTGAAATCC
GTCGCTTCTTCGAAGATTACAAGAAGAATGAGAACAAGGAGGTTGCTGTGAATGACTTCC
TGCCACCAAACACTGCACAAGAGGCCATTAAGCACTCAATGGACCTATATGCTGAATATA
TCCTGCAGAGTCTGAGGAACTAATCGTAGTTGCAAACTTGCGAGGCTGCAGAAACCGCCC
TCATGGTCTCGTAAAACGACAATAATGGACTACATGGCTTTCATTTAAGGAGCTATTTTT
TCTATGTACTTAAAAGAAAGGAACATGTTATCCTTATGCATATTTTTGTGCAGAACATTG
TAACCAAGGACTAATGTCATGCTTCGGCATAGTGTTTCGTTATATCCGAATCAACGCTTG
AAACATTTAGTCCTGCCAAAAAAAAAAAAAGGGG

Homology of Contig U35_21600 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g26600.1	205	6e-112	protein\|soluble inorganic pyrophosphatase, putative, expressed
Brachypodium v1_2	Bradi3g25880.1	206	2e-113
Arabidopsis v10	AT1G01050.1	212	1e-104	\| Symbols: AtPPa1, PPa1 \| pyrophosphorylase 1 \| chr1:31382-32670 REVERSE LENGTH=212