barSeed - Barley Seed Development Database

Probe CUST_4637_PI390587928

Source Contig U35_21607

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4637_PI390587928	Hv_44K_v2	TTCTGTTCGCAATTTGTAGTTCTTGTCCTGGTGTGTCCCGCCCGTTAATAGTTAATACCC	1704	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61801.1	2552	7e-23	741 - 800	98	59 / 60	minus	ABC09397 ABC39299
JLOC1	JLOC1_40405.2	3877	4e-23	2551 - 2610	98	59 / 60	plus
Harvest21	ABC39299	582	3e-25	27 - 86	100	60 / 60	minus	ABC39299
Harvest35	U35_21607	1790	3e-25	1705 - 1764	100	60 / 60	plus

Contig Sequence (1790 bp)

>U35_21607 1790 Hv_44K_v2
ATAGCATCCACAGCAGCAACGACACTACAGGCCACAACAGCCCATTGCCGTCTCCGATGG
AAATGGGTTCTTCTCCAGCACCGGCGGGCGAGAAAGCACACGCCGTGTGCCTGCCGGCGG
CCGCCCAGGGGCACCTCATCCCCATGCTCGACGTGGCCAAGATGCTCCACGCCCGCGGCT
TCCATGTCACCTTCGTCAACACCGAGTACAACCACGCCCGCCTCGTACGAGCGCGGGGCG
CGGCCGCGGTGGCAGGCGTCCCCGGGTTTCGCTTCGCCACCATCCCGGATGGCCTGCCGC
CGTCTGACGACGATGTCACGCAGGACATCCTGTCGCTCTGTAAGTCCCTCACGGAGACCT
GCCTCGGGCCCTTTCGCCGCCTCCTTGCGGAGCTGAATGACCCCGCCACGGGCCACCCGC
CCGTAACCTGCGTCGTCTCCGACATCGTGATGGACTTCTCCATGGAAGTGGCCAGGGAGC
TCGGCCTCCCCTATGTCCTGCTATGGACGTCCAGCGCTGTTAGCTACGTGGGTGTCCGCC
ACTACCGCCTCCTCTTCGAGCGTGGCCTCGCACCGATCAAAGACGTCAAGCAGCTGACGA
GCGAGTACCTTGACATTCCGGTGGAAGATGTGCCGGGCCTACGGAACATGAGGTTCAGGG
ACTTCCCGTCCTTCATACGCAGCCCGGCACCGGACGACTACATGATGCATTTCGCACTCG
GCATCGCAGAGCGCGCGATAGGCGCATCGGCGATGATCGTCAACACCTTCGACGACCTTG
AGGGAGAGGCGGTGGCGGCCATGGAGGCGCTCGGCCTGCCCAAGGTCTACACCATCGGCC
CACTCCCGCTGCTGGCGCCAAGCTCAAGCATCAACATGAGCCTGTGGAGGGAGCAGGAAG
AGTGCCTGCCGTGGCTCGATGACAAGGAGCCTGACTCCGTCGTGTACGTGAACTTCGGCA
GCATCACCGTCATGACCAACGAGCAGCTCGTCGAGTTTGCCTGGGGGCTAGCCAAGAGTG
GCAGGCATTTCCTCTGGATCATCCGTCCCGACCTCGTCAGGGGTGACACCGCTGTGCTTC
CCCTTGAGTTCTCGGCTGAGACCGCCGAGCGTGGTATCATTGCCTCCTGGTGCCCGCAGC
AGCAAGTGTTGAGCCACCCGGCTGTGGGCGCGTTCCTCACACATAGCGGCTGGAACTCGG
CATTGGAAAGCATGTGCGGCGGAGTGCCCATCATCAGCTGGCCATTCTTCGCGGACCAGC
AGACCAACTGCCGATACCAATGCACTGAATGGGGCGTCGGCATGGAGATCGATAGCGACG
TTCGGCGTGATGCCGTCGCACGCCTTATCACAGAGATCATGGAGGGGGAAAATGGCAAGG
TGATGAAGAAGAAGGCACACGAGTGGAGGGAGAAAGCGGCCAAGGCCACCAAGCCCGGCG
GTTCATCTCACCGCAACTTCGACGAGTTGATCCGTGATGTGCTAGCTCCCCGCTATGGGT
AAAGAAATCATAGTGCACCTGCTTCAAGGTGTTCTTTTCCCAATCCCAGTTTTTTGGAAG
AGGTCGAAAAAACTGGTCTTTTTTTGGGGGTGGATGAACCGGTTTCGGAGGAGGTAATCT
CACTAAGTTACAGCCCAATACAATCAAATAAATTAGTATGAATTATCAGTTTTACTGCCA
ACAATAGATGTAATTGACCCATAGTTCTGTTCGCAATTTGTAGTTCTTGTCCTGGTGTGT
CCCGCCCGTTAATAGTTAATACCCCGCACATGGAAAAAAAAAAAAAAAAA

Homology of Contig U35_21607 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g51930.1	486	0.0	protein\|cytokinin-O-glucosyltransferase 2, putative, expressed
Brachypodium v1_2	Bradi3g58670.1	493	0.0
Arabidopsis v10	AT1G22360.1	481	1e-172	\| Symbols: AtUGT85A2, UGT85A2 \| UDP-glucosyl transferase 85A2 \| chr1:7895068-7897527 REVERSE LENGTH=481