- Probe CUST_4634_PI390587928
- Source Contig U35_20
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4634_PI390587928 | Hv_44K_v2 | CTGTCCAGGTCCTTGCAGGGCTCACGATGGACCAACAAAGCCTCGTGGTGCTGGAGAAGG | 48 | GeneList: darkolivegreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.026 | 0.044 | 0.836 | 1.650 | 1.346 | 2.345 |
| Raw | 39.415 | 98.914 | 1854.133 | 5716.773 | 1630.697 | 3098.173 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_34528.1 | 775 | 2e-24 | 459 - 518 | 100 | 60 / 60 | minus | ABC13415 |
| MLOC | MLOC_34528.2 | 647 | 2e-24 | 331 - 390 | 100 | 60 / 60 | minus | ABC13415 |
| JLOC1 | JLOC1_22276.1 | 607 | 8e-25 | 459 - 518 | 100 | 60 / 60 | minus | |
| Harvest21 | ABC13415 | 572 | 3e-25 | 58 - 117 | 100 | 60 / 60 | plus | ABC13415 |
| Harvest35 | U35_20 | 374 | 3e-25 | 49 - 108 | 100 | 60 / 60 | plus |
Contig Sequence (374 bp)
>U35_20 374 Hv_44K_v2 GCCTATCAATACATCCACGACCTTGTTTCTCTCTCTCCCTCCATTTCTCTGTCCAGGTCC TTGCAGGGCTCACGATGGACCAACAAAGCCTCGTGGTGCTGGAGAAGGCCGTCGCCGCCG CCGTCGCCAGGGAAGGGGATGCCGTCTGTGGTTGGGGGACGGAGGAGCAGGCGAGGGCGA TCATACGCGCGGCCAAGATGGCGCTCGAGGAGGCCGCCGCCATGGGGGAGTCCCCGTCGC TCCTGAGGTCGCTGGAGCGGTTCCTCGCGCAGAGGAGATCGGACCAGACGACCATGCCGC CGGCGCCGGCGGTGGACGTCCAACCGGACGGCGGGGATTCCACCGTCTCCGCGGCCTTGC AAGATCTGGCCATT
Homology of Contig U35_20 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |