barSeed - Barley Seed Development Database

Probe CUST_4632_PI390587928

Source Contig U35_22

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4632_PI390587928	Hv_44K_v2	ATGATGTGTGATTCGACCAGGACTTGTCCAATCGTGGGAATAAAAGTCATAAAAAGTTCT	1064	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.011	0.010	0.329	1.766	2.945	3.931
Raw	93.282	135.148	7206.160	53941.033	33755.367	49482.100

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_29606.1	580	4e-23	10 - 69	98	59 / 60	minus
Harvest21	ABC28953	205	3e-25	115 - 174	100	60 / 60	plus
Harvest21	ABC00817	1613	3e-25	1389 - 1448	100	60 / 60	plus	ABC00817
Harvest21	ABC48248	156	1e-23	37 - 96	98	59 / 60	minus
Harvest35	U35_22	1147	3e-25	1065 - 1124	100	60 / 60	plus

Contig Sequence (1147 bp)

>U35_22 1147 Hv_44K_v2
CTAGCCCACAAGCTTTACATTACTAGGAAAGGTTTAGCTAACACAAATCCACCATGAAGA
TCTTAATCATCCTTACAATCCTTGCCATGGCGACTACCTTCGCCACCTCTGAGATGCAAG
TCAACCCTAGTGTCCAAGTACAACCGACACAACAACAACCATATCCCGAGTCTCAGCAAC
CATTCATCAGTCAATCACAACAACAATTTCCCCAGCCACAACAACCATTCCCTCAGCAAC
CACAACAGCCATTTCCTCAATCGCAGCAGCAATGCCTCCAGCAACCACAACACCAATTTC
CCCAACCCACACAACAATTCCCCCAACGGCCACTACTACCATTTACTCACCCGTTCCTAA
CATTCCCCGACCAACTACTCCCTCAGCCACCACACCAATCATTCCCCCAGCCCCCGCAAT
CATACCCTCAGCCACCGTTACAACCTTTTCCTCAGCCCCCGCAACAAAAATATCCCGAGC
AACCACAACAACCATTTCCTTGGCAACAACCAACTATTCAGCTATATCTCCAACAACAAC
TGAATCCGTGCAAGGAGTTTCTCTTGCAACAGTGCAGGCCTGTGTCATTGTTATCGTACC
TCTGGTCAAAGATCTTGCAACAGAGCAGTTGTCGGGTGATGCAGCAACAATGTTGCCTGC
AATTGGCACAGATCCCTGAACAATACAAATGCACAGCAATCGATAGCATTGTGCATGCCA
TCTTCATGCAGCAAGGCCAAAGACAAGGCGTGCAGATCGTGCAACAACAACCTCAGCCGC
AACAGGTGGGTCAATGTGTACTCGTCCAGGGTCAGGGCGTCGTCCAACCGCAACAACTAG
CTCAAATGGAAGCAATCAGAACGTTGGTGTTGCAGTCCGTTCCATCCATGTGCAACTTTA
ATGTCCCACCTAACTGCTCCACCATCAAAGCACCATTTGTTGGTGTAGTCACCGGTGTTG
GAGGACAATGAAAAGATGAGAGCTATAATAATTAGTACATGGATCATCGTTGCATAATCG
ATGGACCAATCGATGTAATAATGATAAATAAAGTGTCGTGCACCATGATGTGTGATTCGA
CCAGGACTTGTCCAATCGTGGGAATAAAAGTCATAAAAAGTTCTTCTAAAAAAAAAAAAA
AAAAAAA

Homology of Contig U35_22 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None