barSeed - Barley Seed Development Database

Probe CUST_4621_PI390587928

Source Contig U35_21613

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4621_PI390587928	Hv_44K_v2	AAATCCCCAATTTCAATTAGGACGTTTTCTGCAAATCGTCCAGTCTCTCCACAGAGGAGG	1281	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250482.1	2819	2e-24	1247 - 1306	100	60 / 60	plus	ABC23413
MLOC	MLOC_61488.3	2810	2e-24	768 - 827	100	60 / 60	plus	ABC23413
MLOC	MLOC_61488.1	2775	2e-24	1013 - 1072	100	60 / 60	plus	ABC23413
MLOC	MLOC_61488.4	2547	2e-24	767 - 826	100	60 / 60	plus	ABC23413
MLOC	MLOC_61488.5	2785	2e-24	766 - 825	100	60 / 60	plus	ABC23413
MLOC	MLOC_61488.2	2939	2e-24	912 - 971	100	60 / 60	plus	ABC23413
MLOC	MLOC_61488.6	2677	2e-24	764 - 823	100	60 / 60	plus	ABC23413
JLOC1	JLOC1_40183.2	2547	8e-25	767 - 826	100	60 / 60	plus
JLOC1	JLOC1_40183.1	2503	8e-25	767 - 826	100	60 / 60	plus
Harvest21	ABC20811	1244	3e-25	1012 - 1071	100	60 / 60	plus
Harvest35	U35_21613	1515	3e-25	1282 - 1341	100	60 / 60	plus

Contig Sequence (1515 bp)

>U35_21613 1515 Hv_44K_v2
TCGAGCACTGTTGGCCTGCATCCCCAACTCGTCGTCGTCTTCCCAAGGCACCAACCCTAG
CCATCCCTCCTCGGCATCCTCCCCCCCCAAGCCGGCGGCCGCCGCCCGTCTGTGAAGATG
TCAGGAGGCTTCTTCCGGGGGACGTCGGCCGACCAGGATACCAGATTCTCCAACAAGCAT
GCCAAGTTGCTGAAGACACAGAAGTTCGCGTCTGAGCTTGACCATCAGGTGGACATGTCA
AAGGTGAAGATGGACGTGATGAAGCCGTGGATTGCCACACGGGTCACTGAGCTTCTTGGG
TTCGAGGACGAAGTGCTTATCAACTTCATCTACGGCCTGCTCGATGCGAAGGAGGTGGAC
GGGAAGTACATACAGATCCAGCTGACGGGGTTCATGGAGAAGAATACAATAAAGTTCATG
AGGGAGCTGTGGAGCCTCCTTCTAAGTGCGCAGCAGAATGCCAGTGGTGTGCCCCAGCAA
TTTTTGGATGCAAAGGAGGCTGAGATTCAGCAGAGAAAGGCGGAAGAGGCTAGAATTGCC
CAGGAGATCCAGAAGAAGCGAGAGAAAGATGGTAGGGACGCAGAACTAGATAAACGCAAA
ATGATGGCCGGGGATACTGGTAATTCAAGATCTCATGGCGATTCACTTGGTTCTGCTTTA
AACAATCCCAATGTCGATGCTGAGAAAGAAAAGGAACTGGACTTGAAGCATAGCTCGAGA
ACAAAGAGCCGGGAACATCGAAGACCTAGGAGCACATCTCTGTCGCCCCGTGGTAGGCAA
CGGTCTATTTCTCCAAGGAGGCGCTCTCCATCCCCTTCCAGACAAAGATCATCACGACGT
TCAGCTTCACCTAGACGTTCTGTTTCCCCCCGAAGGCATTCCCCAAGAATCGCTCCTTCA
ATGTCTAGGCGGAGGTCACCGTATTCCAGGAGATCACCTTCGGTACCTAGATCCCCATCA
CCTCGGCGGAGATTTCCCATTAGGAGAAGATCTCCACCATCTGGGCGACGTAGATCACCA
TCTCCTTATCGCCGTCGGTCCCCAGCTCGCCCACCTAGGAGATCGCCATCTCCTGCTCGG
CGCAGATCACCTCCTCGACACAGATTACCAGCAGATAGACACCGGTCCCCATCTCCAGGA
AGACGCAGGCCACGATCCCCATCACCTGTAAGACGCAGGCCGCGGTCCCCATCACCTAGA
AGACATAGGCGTTCTCCAGGAAGACGGCAGTCCCTGTCACCTCACCGCTCACCGCAGTTG
AGGTCGCCAAAACGCCAGAGAAAATCCCCAATTTCAATTAGGACGTTTTCTGCAAATCGT
CCAGTCTCTCCACAGAGGAGGAGGAGTAGCAGTCCACACAGCAGGAGTCCAAATCGTTCA
CATAGGAGTCCGAGCAGGGATTCAGATAAGGGAACAAACGGTGCTCCCTCCACAAAAGGC
AGGGATCTGGCTCAAAGGAACCAAGAAAGGAGTAGCCGAAAGTCACCGGATTTTGAACAC
CGCGAGCTCACAAAA

Homology of Contig U35_21613 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16369.1	841	1e-104	protein\|retrotransposon protein, putative, unclassified, expressed
Brachypodium v1_2	Bradi1g66870.1	845	4e-125
Arabidopsis v10	AT2G29210.1	878	7e-66	splicing factor PWI domain-containing protein \| chr2:12558156-12562168 FORWARD LENGTH=878