barSeed - Barley Seed Development Database

Probe CUST_4617_PI390587928

Source Contig U35_21617

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4617_PI390587928	Hv_44K_v2	CATGATCAAGTACTACTCAGTTTGTTTTTCCTGTAATAAAAGAGCCCCGTTTCGGTGGCA	950	GeneList: yellowgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.185	2.785	2.171	0.968	0.140	0.044
Raw	2125.939	8192.307	5374.723	3831.464	193.786	65.038

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC14589	1028	3e-25	951 - 1010	100	60 / 60	plus	ABC14589
Harvest35	U35_21617	1028	3e-25	951 - 1010	100	60 / 60	plus

Contig Sequence (1028 bp)

>U35_21617 1028 Hv_44K_v2
GCGGCATCGTGCTGTCGTGGAAGCTGAGGCTCGTGCCCGTTCCACCCAAGGTGACTTTCT
TCAAAGTGGCCAAGACCATGGAACAGGGCGCGGTCGACGCGGTGACCAAATGGCAAACGC
TCGCGCCGGCGCTCCCGGACGACCTCAGCGTGCGTGTCGTCATCCAGAAGAGCAAGGCCA
CCTTCCAGTCCCTGTACCTCGGCAACTGCAGCACGGTGGTGGCGACGATGCACAGCCGGT
TCCCGGAGCTGGGCGTGACGACCGCCGACTGCAAGGAGATGAGCTGGCTGCAGTACACGG
CGTACATATACTTCGGCGACGCCATCAACAGCAAGCCGTTGGAGGCGCTCCTCCTCAACC
GCTCCATGACCCTAGGCCCTTTCGTGAAGAACAAGTCGGACTACGTGAAGAAAGCCCTCA
CCAAGGAGACCTTGGAGAAGATCTTCCTCTGGCCCAACGGCGCGGGGTCGGGGCAGCTCA
TCCTCGAGCCGCACGGCGGAGTAATGGGCCGCATCGCCGCCGACGAAACCCCGTTCCCGC
ACCGGCGCGGCGTGCTCTACAACATACAGTACGTGGAGCTATGGAACTTCAATGGGGCGC
CCGGGGGCGAGGTTACGCCGAACTGGATCGGGAGCTTGTACGATTTCATGACGCCGTACG
TGAGCAAGAACCCGAGGCGAGCGTACGTCAACTACCGGGACCTCGACATGGGCGTGAACA
AGGTGGTCGACGGGGTCACGTGCTACGTGACTGCCAGGCTGTGGGGCGAGAGGTATTTCG
GCCCGGCAAACTTTTGGAGGCTTACCAACGTCAAGCGGAAGGTGGACGCCAGCGACTACT
TCCGGAACGAGCAAAGCGTGCCGCCACTTAGCATTTGACTGTATTGTAACTGCTAATAAT
AGTCATTCGGATGGGATAAAAAGGTCATTTACATTTGTCAACATAATAAACATGATCAAG
TACTACTCAGTTTGTTTTTCCTGTAATAAAAGAGCCCCGTTTCGGTGGCANAAAAAAAAA
AAAAAAAA

Homology of Contig U35_21617 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g35650.1	527	4e-108	protein\|reticuline oxidase-like protein precursor, putative, expressed
Brachypodium v1_2	Bradi5g17300.1	518	2e-112
Arabidopsis v10	AT4G20860.1	530	8e-66	FAD-binding Berberine family protein \| chr4:11172726-11174318 FORWARD LENGTH=530