barSeed - Barley Seed Development Database

Probe CUST_4600_PI390587928

Source Contig U35_34

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4600_PI390587928	Hv_44K_v2	CCGTGTGTGATGTATAATTTGATCGGCATGTGATCAAAATACATCAGATGCAATTTCAAT	883	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.078	4.396	1.129	0.614	0.178	0.202
Raw	562.599	641.220	138.685	114.458	12.390	15.057

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251136.1	989	2e-24	910 - 969	100	60 / 60	plus	ABC00120 ABC00610 ABC00897
MLOC	MLOC_23029.4	740	2e-24	673 - 732	100	60 / 60	plus	ABC00120 ABC00610 ABC00897
MLOC	MLOC_23029.3	1505	2e-24	1438 - 1497	100	60 / 60	plus	ABC00120 ABC00610 ABC00897
JLOC1	JLOC1_15926.1	1451	8e-25	1360 - 1419	100	60 / 60	plus
Harvest21	ABC00120	987	3e-25	884 - 943	100	60 / 60	plus	ABC00120
Harvest35	U35_34	987	3e-25	884 - 943	100	60 / 60	plus

Contig Sequence (987 bp)

>U35_34 987 Hv_44K_v2
TCCTCCCCCACCCTCCACCAAGTTTCGTCTCTTTCATCCACACCTCCTCCTGCTCGAGAT
GGACCCCGTCGAGCGCCTCAAGACCGGCTTCGAGAAGTTCAAGACCGAGGTCTACGACCA
GAAGCCGGATCTCTTCGAGCCCCTCAAGGCCCACCAGTCACCCAAGTACATGGTGTTCGC
GTGCGCCGACTCACGCGTGTGCCCGTCGGTGACCCTGGGCCTGGAGCCCGGCGAGGCCTT
CATGGTCCGCAACATCGCTGCCATGGTCCCTTGCTACTGCAAGAACAAGCACACCGGCGT
CGGGTCGGCCATCGAGTACGCCGTCTGCGCCCTCAAGGTCGAGGTCATCGTGGTGATCGG
CCACAGCCGGTGCGGCGGGATCAAGGCCCTGCTCAACCTCAAGGATGGCGCCGACGACAC
ATTCCACTTCGTCGAGGACTGGGTCAGGATTGGCTTCCCGGCCAGGAAGAAGGTGAAGGA
CGAGTGCTCCGAGATGCCATTCGAGGACCAGTGCGGCGTCCTGGAGAAGGAGGCCGTCAA
CGTGTCCCTCCAGAACCTCAGCACCTACCCGTTCGTCAAGGAGGGTGTGGCCAACGGAAC
CCTCAAGCTGGTCGGCGGCCACTACGACTTCGTCTCCGGCAAGTTCGACACATGGGAGCT
GTAAATCAATCTCCCCTCCCATTGCTCAAATCCCAAATATACATCCATACATGCGCACAT
ATATCATATCAAAGATACCGTGGGAATGATGCATCGATGTAAACGACATGGACCATGCAC
TGCTCGTTATTTTCCAGCAGTTGGGGACGCCGGATGGCTAGATGTCAATTTTTTTGTAAT
AAGGTATCAAATCTTCCGATCCGGAATTATTGTACAAATATTACCGTGTGTGATGTATAA
TTTGATCGGCATGTGATCAAAATACATCAGATGCAATTTCAATAATATTTCCATCAACAG
TTTACCTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_34 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g45274.4	203	3e-116	protein\|carbonic anhydrase, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi2g44856.1	203	5e-130
Arabidopsis v10	AT5G14740.1	331	2e-78	\| Symbols: CA2, CA18, BETA CA2 \| carbonic anhydrase 2 \| chr5:4758257-4762382 FORWARD LENGTH=331