barSeed - Barley Seed Development Database

Probe CUST_4599_PI390587928

Source Contig U35_35

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4599_PI390587928	Hv_44K_v2	GAAATCTTTGGGGACGATTCTGTATTACAATTTGGTGGAGGAACCTTAGGACATCCTTGG	936	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.768	4.269	1.099	1.048	0.650	0.667
Raw	55640.400	53810.567	12481.037	19215.577	3996.283	4571.670

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction
Harvest21	ABC04254	1408	1e-23	597 - 656	98	59 / 60	minus
Harvest35	U35_35	1117	3e-25	937 - 996	100	60 / 60	plus
Harvest35	U35_33264	640	1e-23	519 - 578	98	59 / 60	minus
Harvest35	U35_33243	633	1e-23	523 - 582	98	59 / 60	minus
Harvest35	U35_33229	795	1e-23	404 - 463	98	59 / 60	plus
Harvest35	U35_33160	787	1e-23	63 - 122	98	59 / 60	plus
Harvest35	U35_33140	748	1e-23	122 - 181	98	59 / 60	plus
Harvest35	U35_136	1785	1e-23	1473 - 1532	98	59 / 60	plus
Harvest35	U35_33328	592	6e-22	520 - 579	97	58 / 60	minus

Contig Sequence (1117 bp)

>U35_35 1117 Hv_44K_v2
GGACAAGTTGAGAGCAGAAAGAGAGGAGGAAAAGAATGCTCTGCTTAGGGGCAGAGCTAC
TGTTGAATCCGAAATACAAGTTCTTTCAAAGTTGAGGTGTGAAGTAGAGGAGCAGCTGCA
GAATGTGCTGAGCAAGAAGGTCGAGATCAACTTTGAGAAGAACAGGATTGAGAAACTTCA
AAAGGAAATCGAGAATGAAAACCAGGCTGCTGTGCAACTTCAGTATGAGCTTGAAGTTGA
AAGGAAGGCTTTGTCTATGGCCAGGGCTTGGGCAGAGGATGAAGCAAAGAAGGCCAGGGA
GCATGCTCGTGCCCTTGAGGAGGCCCGGAACCAGTGGGAGCGACAAGGGATCAAAGTTGT
CGTTGACGCAGGGCTTGAGGAGGATGCATCGGCCGGAGTGACATGGGCTAATGCTGGCAA
AGAACACCCAGTTGACGAGGCAATCAACCGGGCGGAGTCCCTGCTGGAGAAGCTCAAGTC
GTTTGCTGGTGAGATGAAAGTCCGATCCAGCCATGCCCTGGAGAGAGTAATGCAGTATGT
GAGGTCCTTGATCTCAAGCCTGAAGGAGGGAGCGGCGCAAGGGTGCGCAGATCTTGGGGC
TGCTGCAGCCTCAAAGGCAAAGAAGCTGTCATCAGAAGCGAAGGCGTTGGGTTCAAGCGT
CGGGGACAAGTCGAAGAAGGTAGTGGAGGACTGCAAAGACGGCCTGGAGAAGTTTGTGCA
CAGATTCAAGACAGACTAGCTGCTGGTAGGGAGCTTTTCATGCCTTGTGTATCTGAGACC
AGACAATTTATAGCCAGCCAAAGAGACAAGAAACCGAGGAATAAATTTTGTGGCAGCTTG
TGCTACATTTTGCGTCATGTGATGTTGGCCGCTGCCAGGTACATTACATGTAGGGTGAGG
TGGTAAATGAATGTTTGGCATATGCCAGCTCTGACCGAAATCTTTGGGGACGATTCTGTA
TTACAATTTGGTGGAGGAACCTTAGGACATCCTTGGGGGAATGCACCTGGTGCAGCAGCT
AATCGAGTGGCTTTAGAAGCTTGTGTACAAGCTCGTAACGAAGGGCGTGATCTTGCTCGC
GAAGGTAATGAAATTATCCGAGCAGCTTGCGAATGGA

Homology of Contig U35_35 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g64400.2	609	1e-93	protein\|oxidoreductase/ transition metal ion binding protein, putative, expressed
Brachypodium v1_2	Bradi1g00480.2	912	6e-96
Arabidopsis v10	None