barSeed - Barley Seed Development Database

Probe CUST_4590_PI390587928

Source Contig U35_21626

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4590_PI390587928	Hv_44K_v2	ATTAACCGGCAGTGACATTCTTGCAAGAGCAAAAAATGGAACCGGCAAGACTGCTGCATT	618	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54847.1	1770	2e-24	854 - 913	100	60 / 60	minus	ABC10644 ABC10645
MLOC	AK363720	2298	7e-23	604 - 660	100	57 / 57	plus	ABC10644 ABC10645
MLOC	AK357829	2185	7e-23	557 - 613	100	57 / 57	plus	ABC10644 ABC10645
JLOC1	JLOC1_35326.2	1715	8e-25	682 - 741	100	60 / 60	plus
JLOC1	JLOC1_35326.1	1702	8e-25	673 - 732	100	60 / 60	plus
Harvest21	ABC15317	682	3e-25	619 - 678	100	60 / 60	plus
Harvest35	U35_21626	683	3e-25	619 - 678	100	60 / 60	plus

Contig Sequence (683 bp)

>U35_21626 683 Hv_44K_v2
CAGCGCACAACGGAGGCAAATTCCCCAATTCCACCGACCAACGCCTCCCGAGTCGTCGCT
CCGAACTCCGAATCATAGCATTCCGGCCGGATCTATCCGACAGCCGGAGCTCCCTTCGCT
TTGCGCGGCCGTTTTGTTCGATTCCGGAGAAGTGATGGATCAGCGGGCGAGGTACCCTCC
CGGCATCGGCAACGGCCGCGGCGGGAATCCTAACTACCATGGCCGTGGCCCGCCGCCGAC
GCAGCAGCAGCAGCAGGCGCAGGGGCACCAGGAGCAGTACATGCAGCGGCACTCGCAGCA
CTCGCAGCACCACGACCAGCAGCTTCAGCATCAGCAGTGGCTTCGGCGGAATCAGGCCGC
TGGCGAGGCCGCGGGCGCTGCCAGAGCCAGCGAGCACCACGCGCCGCCTGCCGCCGATGA
CGCCGATTTGAGTTCGCAAGACTGGAAGGCCCAATTGAAGCTTCCACCTCCAGATACGCG
CTACCAGACCGAGGATGTCACTGCAACTAAGGGGAATGAATTTGAAGACTATTTTCTGAA
GCGTGAACTTCTTATGGGCATATATGAGAAAGGATTTGAAAGACCGTCTCCTATCCAAGA
AGAAAGCATTCCTATTGCATTAACCGGCAGTGACATTCTTGCAAGAGCAAAAAATGGAAC
CGGCAAGACTGCTGCATTCTGTA

Homology of Contig U35_21626 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g16700.3	496	5e-56
Arabidopsis v10	None