barSeed - Barley Seed Development Database

Probe CUST_4589_PI390587928

Source Contig U35_21628

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4589_PI390587928	Hv_44K_v2	AGGGGAAACTGACATTTGTACTACTGCAGCTAAAAGAGCTCCTTGTATATGATATAGTGA	845	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.521	1.573	1.949	1.698	0.692	0.836
Raw	213.995	997.747	1079.403	1477.507	216.431	277.284

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367971	2371	2e-24	2271 - 2330	100	60 / 60	plus	ABC05420 ABC20222
Harvest21	ABC20222	966	3e-25	846 - 905	100	60 / 60	plus	ABC20222
Harvest35	U35_21628	966	3e-25	846 - 905	100	60 / 60	plus

Contig Sequence (966 bp)

>U35_21628 966 Hv_44K_v2
GCAATGACTATCTTGGCACATTTGAGTACTGGTGGAGTCATGGCCTCATCTCTGACAGCA
CTTACCACAACTTGAAGAAGACATGCTTGTTTGATTCCTCAGAGCACCCTTCCCCTGAAT
GTGTCAAGAACCTGAACCTGGCTAGTTCCGAAGAAGGCAACATCGACCCTTATAGCCTGT
ATACAAAGCCCTGCAATAGCTCAGCCTCTCTCAAACTTGGCCTCGGAGGACGCTATCCTT
GGTTGTCCAGAGCTTATGATCCTTGCACCGAAAGATATTCAAATATATACTACAATCTGC
CAGAAGTACAGACGGCGTTGCACGCTAACACAACTGGAATTAAATACCCTTGGAAAACTT
GCAGTGATATTGTCGGATCGTATTGGGCGGATTCCCCCAGATCTATGCTTCCAATCTACC
ATGAGCTAATTGCAGCTGGTATCAGGATATGGGTATTCAGTGGGGATACAGATGCTGTGG
TTCCTATAACTGCAACAAGATATTCCATAAGCGCTCTCAAGCTACCAACGCTGATGAATT
GGTACCCTTGGTATGACCACGGGAAGGTTGGAGGTTGGAGTCAGGTTTACAAAGGACTAA
CCCTCGTCACCGTAGCAGGTGCAGGGCATGAGGTACCTCTGCACCGGCCTCGACAAGCAT
TAATACTATTCAGACACTTCTTGAAGGACACACCAATGCCCACTCAATAGCGACTTGAAG
CAAATGATAGTGTAAACTATGAAAATCATATTCACCGTTTTTTCACATTCTTTTTTTGTT
TGATTTGATCATTACAACATTTTAATTCAGTTATCTCTATTGAAAATGTATGTATCTTAG
CTAATAGGGGAAACTGACATTTGTACTACTGCAGCTAAAAGAGCTCCTTGTATATGATAT
AGTGATTATTTGAGAAGTACAATTTCCAGATTTACTCACTGCACAGAAAGAAAAAAAAAA
AAAAAA

Homology of Contig U35_21628 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g61690.1	455	8e-164	protein\|OsSCP5 - Putative Serine Carboxypeptidase homologue, expressed
Brachypodium v1_2	Bradi2g54150.1	452	1e-170
Arabidopsis v10	AT3G07990.1	459	5e-134	\| Symbols: SCPL27 \| serine carboxypeptidase-like 27 \| chr3:2552544-2554644 FORWARD LENGTH=459