barSeed - Barley Seed Development Database

Probe CUST_4584_PI390587928

Source Contig U35_19310

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4584_PI390587928	Hv_44K_v2	ATATCCGTAACTCACGGACTAGTTGCTCTACATTCTTGCAGTACAGCTGTTACTGATACC	754	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.973	2.118	1.069	0.856	0.319	0.376
Raw	186.050	314.826	139.505	175.405	22.681	29.768

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_12898.1	842	2e-24	281 - 340	100	60 / 60	minus	ABC10271
JLOC1	JLOC1_8681.1	1588	8e-25	146 - 205	100	60 / 60	minus
Harvest21	ABC10271	814	3e-25	1 - 60	100	60 / 60	minus	ABC10271
Harvest35	U35_19310	814	3e-25	755 - 814	100	60 / 60	plus

Contig Sequence (814 bp)

>U35_19310 814 Hv_44K_v2
GCTTGACATGGAAGCTAGTGGGCCAGAGGGAACTTCATTGCTGAAATACAAGGTTCCAAC
CAGAGGCCTCATTGGGCTCCGGAATGCAATTCTAACAGCTTCTAGGGGCAGAGCTATACT
TAACACAATCTTTGACAGCTATGGCCCGTGGGCTGGAGATATTAGTTCACGTGATCAAGG
CTCATTGGTGGCATTCGAAGGTGGAAGTACTACTTCTTATGCTTGTGTTAATGCACAAGA
AAGAGGTATACTATTTGTCAAACCAGGGCAGGATATTTACAAAGGCCAGATAGTTGGTAT
CCATCAGCGACCAGGTGATTTAGCACTTAATGTGTGCAAGAAAAAGGCTGCAACAAATGT
TCGTTCGAACAAGGAAACTACAGTGGTTCTTGATGAACCTTTAAGCTACAGTCTGGATGA
CTGCATAGAGTATATTCAAGAAGATGAGCTAGTCGAGGTTACACCTGAGAGCATCCGCAT
GTCCAAGAACCCAAAAATTTCGAAGAAGAACAACAAGAACTAGGCCTCCTGGAAGGATAA
CCAATATACGCTATTGGATCATTTCATTCTGCAACCATGGGTTTCCGATAGAAAACCTGG
CTGTTGCTTCGGCTTGTTTGATAGTGACCAGTATATGACGAGAGATACCATGAGTCAGTC
AGCAAGCTATTTTTGGTGGCCTACACTGTTGAGATTAGGATTATACTCAAAATTTTGCAA
TGAAGCCGTTATAGTAATCAAACTCAGATGTTACATATCCGTAACTCACGGACTAGTTGC
TCTACATTCTTGCAGTACAGCTGTTACTGATACC

Homology of Contig U35_19310 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g18450.1	670	4e-93	protein\|GTP-binding protein typA/bipA, putative, expressed
Brachypodium v1_2	Bradi3g10530.1	678	4e-102
Arabidopsis v10	AT5G13650.2	676	2e-81	elongation factor family protein \| chr5:4397821-4402364 FORWARD LENGTH=676