barSeed - Barley Seed Development Database

Probe CUST_457_PI415269222

Source Contig TA37550_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_457_PI415269222	Hv_44K_v2	AGATTGGTTGGGTCTATGGATCAATGACAGAAGACATTTTGACCGGACAACGGATCCATG	708	GeneList: darkred MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.080	2.631	4.892	1.558	0.869	0.768
Raw	7.984	35.104	53.302	25.427	3.960	3.806

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK248259.1	1649	2e-24	569 - 628	100	60 / 60	plus	ABC07068
MLOC	MLOC_53007.3	2779	2e-24	1669 - 1728	100	60 / 60	plus	ABC07068
MLOC	MLOC_53007.1	2610	2e-24	1529 - 1588	100	60 / 60	plus	ABC07068
MLOC	MLOC_53007.2	2601	2e-24	1520 - 1579	100	60 / 60	plus	ABC07068
MLOC	MLOC_53007.4	2179	2e-24	1188 - 1247	100	60 / 60	plus	ABC07068
JLOC1	JLOC1_34010.2	2538	8e-25	1450 - 1509	100	60 / 60	plus
JLOC1	JLOC1_34010.1	2608	8e-25	1520 - 1579	100	60 / 60	plus
Harvest21	ABC07068	1770	1e-23	701 - 760	98	59 / 60	plus	ABC07068
Harvest35	U35_3097	1803	1e-23	701 - 760	98	59 / 60	plus

Contig Sequence (1124 bp)

>TA37550_4513 1124 Hv_44K_v2
CGGACGAGGGCGGCGACGAGTTCGCCGAGTTCATCGACGCCGAGCGCGGGAACCATCCTA
CCATCGTTAAGGTTCTGTGGGATAACAGCAAGAGCAAAGTGGGGGAAGGATTCCCACATC
TGGTGTACCTCTCTCGAGAGAAAAGCCCCAGACATCGCCACAACTTCCAGGCTGGTGCCA
TGAATGTTCTGACAAGGGTGTCAGCCGTGATGACCAACGCTCCCATCATGCTGAATGTGG
ACTGCGACATGTTCGCCAACAATCCGCAGGTCGCCCTACACGCGATGTGCCTCCTATTGG
GGTTCGACGACGAGATCCACAGCGGGTTCGTCCAAGTGCCACAGAAGTTCTACGGTGGCC
TCAAGGACGATCCCTTTGGCAACCAGATGCAGGTTATAACCAAGAAAATTGGAGGTGGAA
TCGCCGGGATCCAAGGCATGTTCTACGGCGGCACGGGCTGTTTTCACCGCAGGAAAGTCA
TTTACGGCATGCCGCCACCTGACACCGTCAAACACGAGACAAGAGGTTCACCATCTTACA
AGGAGCTGCAAGTCAGGTTTGGGAGCTCAAAGGTGTTGATCGAATCATCTAGGAACATCA
TCTCAGGAGACCTGCTCGCTAGACCAACCGTTGATGTATCGAGTCGCATCGAAATGGCAA
AACAAGTCGGCGATTGCAACTATGAGGCTGGCACGTGTTGGGGCAAGGAGATTGGTTGGG
TCTATGGATCAATGACAGAAGACATTTTGACCGGACAACGGATCCATGCGGCGGGTTGGA
AATCGGCCTTGTTGGACACCAACCCACCGGCATTCTTGGGATGTGCTCCGACCGGGGGAC
CGGCCAGCTTGACCCAGTTCAAGAGATGGGCAACAGGGGTTCTGGAGATACTCATCAGCC
GGAACAGCCCTATCCTCGGCACCATCTTCCAACGCCTCCAACTCCGGCAATGCCTTGGCT
ATCTCATCGTCGAGGCGTGGCCCGTGAGGGCGCCTTTCGAGCTGTGCTATGCACTATTGG
GACCTTTCTGCCTTCTCACAAACCAGTCCTTCTTGCCAACGGCATCGGATGAAGGTTTTC
GCATCCCAGTAGCTCTATTCTTGAGTTACCACATATACCACTTG

Homology of Contig TA37550_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g20090.1	751	1e-177	protein\|CSLH1 - cellulose synthase-like family H, expressed
Brachypodium v1_2	Bradi5g10130.1	755	0.0
Arabidopsis v10	AT2G32540.1	755	3e-84	\| Symbols: ATCSLB04, CSLB04, ATCSLB4 \| cellulose synthase-like B4 \| chr2:13814686-13818289 FORWARD LENGTH=755