barSeed - Barley Seed Development Database

Probe CUST_457_PI390587928

Source Contig U35_26391

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_457_PI390587928	Hv_44K_v2	CAGTGGTTAGGAGCTCTCAAAAATTTGCAAATACTAGGTTTAGCTGACAACATCTTTACA	613	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37499.7	3456	2e-24	1594 - 1653	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.3	4181	2e-24	1990 - 2049	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.1	3759	2e-24	1886 - 1945	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.6	3779	2e-24	1840 - 1899	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.8	3438	2e-24	1499 - 1558	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.4	4063	2e-24	1883 - 1942	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.2	4579	2e-24	2605 - 2664	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.5	4050	2e-24	1859 - 1918	100	60 / 60	plus	ABC16778 ABC24048
JLOC1	JLOC1_24284.6	4199	8e-25	1854 - 1913	100	60 / 60	plus
JLOC1	JLOC1_24284.5	4192	8e-25	1858 - 1917	100	60 / 60	plus
JLOC1	JLOC1_24284.4	4221	8e-25	1887 - 1946	100	60 / 60	plus
JLOC1	JLOC1_24284.3	4250	8e-25	1905 - 1964	100	60 / 60	plus
JLOC1	JLOC1_24284.2	4239	8e-25	1905 - 1964	100	60 / 60	plus
JLOC1	JLOC1_24284.1	4232	8e-25	1887 - 1946	100	60 / 60	plus
Harvest21	ABC26101	673	3e-25	614 - 673	100	60 / 60	plus
Harvest35	U35_26391	673	3e-25	614 - 673	100	60 / 60	plus

Contig Sequence (673 bp)

>U35_26391 673 Hv_44K_v2
AGGGCAACATCCAAATGAGATTGCAAAGTTACCTGCGCTCCATATTCTGAACGTGGGTAG
CAATCATTTGACAGGCATGTTTCAACAAGCCATCTTGAATCTTTCTAGTCTTGTTACCCT
TAACCTTGGTCCAAATCATTTAAGTGGTGAGGTACCATCCAATCTTGGTAACTCTCTACC
GAATCTCCAAAAGTTCGCATTAGCCGATAACTTCTTTCATGGAAAAATCCCATCTTCTTT
GATCAACGCATCCCAGATACACATTTTTGATATATCAAAAAATAATTTCACAGGATCGGT
GCTTCGGTCCATTGGCAAACTTTCCGAACTCACATGGTTAAACCTTGAGTTCAATAAACT
CCAAGCACGCAACAAGCAAGATTGGGAGTTTATGAACAGCTTAACCAATTGTACTAAGCT
AAATGCCTTCTCGGTAGAGGCGAATCTTCTAGAAGGCCACATACCAAGTTCGTTATCCAA
CCTTTCCATTCAGCTTCAAAATCTATATTTGCGGCGGAATCAATTGGAAGGGGGTTTCCC
TTCTGGCATAGCGACCCTTCCGAACCTGATTGTTTTAGGAATGAATAGCAATCGATTTAC
AGGTACCATTCCCCAGTGGTTAGGAGCTCTCAAAAATTTGCAAATACTAGGTTTAGCTGA
CAACATCTTTACA

Homology of Contig U35_26391 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g07100.2	1015	8e-80	protein\|receptor-like protein kinase precursor, putative, expressed
Brachypodium v1_2	Bradi4g24410.1	1020	5e-104
Arabidopsis v10	None