barSeed - Barley Seed Development Database

Probe CUST_4574_PI390587928

Source Contig U35_19318

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4574_PI390587928	Hv_44K_v2	GCAGTCAAACTTGTACGACTTTTGACTTTGGATGTACAAATGCATTATTGAGATTGTAAG	874	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37715.1	2978	2e-24	2879 - 2938	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.11	3757	2e-24	3657 - 3716	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.8	2676	2e-24	2612 - 2671	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.5	2739	2e-24	2675 - 2734	100	60 / 60	plus	ABC12184
MLOC	MLOC_37715.6	2733	9e-22	2679 - 2733	100	55 / 55	plus	ABC12184
JLOC1	JLOC1_24450.5	2757	8e-25	2662 - 2721	100	60 / 60	plus
JLOC1	JLOC1_24450.4	2750	8e-25	2655 - 2714	100	60 / 60	plus
JLOC1	JLOC1_24450.3	2848	8e-25	2753 - 2812	100	60 / 60	plus
JLOC1	JLOC1_24450.2	2759	8e-25	2664 - 2723	100	60 / 60	plus
JLOC1	JLOC1_24450.1	2888	8e-25	2793 - 2852	100	60 / 60	plus
Harvest21	ABC12184	992	3e-25	59 - 118	100	60 / 60	minus	ABC12184
Harvest35	U35_19318	992	3e-25	875 - 934	100	60 / 60	plus

Contig Sequence (992 bp)

>U35_19318 992 Hv_44K_v2
CATCAGCTCACTTTCAGTGACGATCAAGACCCCCAAAATACCTTTTTCTATAGGCTTTGC
AAGTCAAAGACACTAGAGAACTTCAAAAATATCATATTGTTATCGTCACCACAGGATGGG
TATGTACCATATCATTCAGCAAGAATAGAGCTCTGCCCTGCTGCGTCGTCTGATACTTCA
AGGAAAGGTCAAGTCTTCACGGAAATGCTGAATAATTGCTTGGATCAGATCCGTGCACCG
TCGTCTGAAACCCGTATATTCATGAGGTGTGATGTTAATTTCGACCAATCTGCCCATGGG
CGGAACCTCAACACAATGATTGGCAGAGCAGCCCACATAGAATTCCTGGAGACTGACATC
TACGCCAAGTTCATCATGTGGTCCTTCCCTGAACTATTCCGATGACGATGACCATGACCA
TGACTATGCTCTCTCTGTAATTTGGGAAGGCATGACGTTCCAAACAAAACCAAAACCAAA
CCAAACCTGGATACTGCACTACTGACCAAGAAAGGAATATAAAGGTTTCGTCACCAAGAT
GGATAGCACTGTAAAGTTGCCTAGCAGTAACATTTTGCCAGTTTGTTAGATTTGATTTGT
ATAAATAGTCGATTTGTTCATTTCGATTTATAGTCCTGTAGATGTGCCGTCAGGTCTTGA
TAATCCAACGTCTTCTGGTGTGGTGTATTTTAGGGCTACCAGCCAGTTTAGGAGGCCCAA
ACAGGCAGTGAGCTTATGTCAAATAAGCATGACATGTGTTTTATCTTTTTTTAATGATCA
CCACATCAGGCAGAGATCATTGTGTGGTTCTTGTCATGTCATGTAGTTGTTGATCTGTAA
CTGAATGTTGAGGATTCATTGGATGCCGGAGAGTGCAGTCAAACTTGTACGACTTTTGAC
TTTGGATGTACAAATGCATTATTGAGATTGTAAGAATCAAAATGATATTCATTATATTTG
TCATCAAGATTCCGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19318 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g06800.1	812	6e-82	protein\|serine esterase family protein, putative, expressed
Brachypodium v1_2	Bradi4g41790.1	811	1e-83
Arabidopsis v10	AT1G58350.1	794	3e-61	\| Symbols: ZW18 \| Putative serine esterase family protein \| chr1:21663131-21666827 REVERSE LENGTH=794