barSeed - Barley Seed Development Database

Probe CUST_456_PI390587928

Source Contig U35_26392

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_456_PI390587928	Hv_44K_v2	ACTACACCATCTTCTGGAACCCCTCCATGATCGTGTGGTTCGTGGACAGCATCCCGATCC	494	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_21703.1	1394	2e-24	791 - 850	100	60 / 60	minus	ABC12692
JLOC1	JLOC1_15056.1	1407	8e-25	635 - 694	100	60 / 60	plus
Harvest35	U35_26392	633	3e-25	495 - 554	100	60 / 60	plus

Contig Sequence (633 bp)

>U35_26392 633 Hv_44K_v2
TACCAACTCGAAGTCGTCGATCGCAGGAATCAGTTGGCTATCCACAGGCAAGGAGGAGAT
GGGGATGTCGATGCGGGCTCTCGTCGCCGTCGTGGCCTTCGCGGCGGTGCTGAAGCTCGG
GCTCGTCGGCGCCAACTTCGCGGACCTGTGCGACATCACGTGGGAGCCGCAGAACGCCGC
GATGACGGACGGAGGGGAGCACCTCACGCTCTCCCTCGTCAGCAACATCTCAGGCAGTAT
GCTCCGGACCAAGAAGACGTTCATCTACGGCAGCATATCCACCTTGATCAAGCTGGTCAA
GGGCAACTCCGCCGGCACCGTCACAACCTACTATACGTCGTCGGTGGGCGACGACCACGA
CGAGATCGACTTCGAGTTCCTGGGCAACGAGACGGGCCAGCCCTACACCATCCACACCAA
CGTGTTCGCGGACGGCGTGGGCGCCAAGGAGATGCAGTTCTACCCCTGGTTCGACCCCAC
CGCCGACTTCCACAACTACACCATCTTCTGGAACCCCTCCATGATCGTGTGGTTCGTGGA
CAGCATCCCGATCCGCGTGTTCCGCAACTACGCGAGCAAGGGCGTGCCGTTCCCGACGAA
GCGGCCGATGTACGGCTTCTCCAGCATCTGGTC

Homology of Contig U35_26392 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g22919.2	312	9e-101	protein\|DEFL9 - Defensin and Defensin-like DEFL family, expressed
Brachypodium v1_2	Bradi3g31767.1	290	1e-107
Arabidopsis v10	AT4G14130.1	289	3e-62	\| Symbols: XTR7, XTH15 \| xyloglucan endotransglucosylase/hydrolase 15 \| chr4:8137161-8138196 REVERSE LENGTH=289