barSeed - Barley Seed Development Database

Probe CUST_4569_PI390587928

Source Contig U35_14943

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4569_PI390587928	Hv_44K_v2	CGCGTTCGTGGATGCAGAAGTGCACAAGTGCAAAATAAAGTGAATCTTTCGGTGGTTCTT	540	GeneList: midnightblue MasterList: Pathogenesis_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.012	0.035	0.908	1.118	2.103	2.156
Raw	673.373	5706.487	135223.933	217071.000	160517.666	186935.333

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65014.1	935	2e-24	179 - 238	100	60 / 60	minus	ABC02052 ABC02053
JLOC1	JLOC1_42746.1	845	8e-25	99 - 158	100	60 / 60	minus
Harvest21	ABC02053	639	3e-25	540 - 599	100	60 / 60	plus	ABC02053
Harvest21	ABC02052	453	1e-24	360 - 418	100	59 / 59	plus	ABC02052
Harvest35	U35_14943	634	3e-25	541 - 600	100	60 / 60	plus
Harvest35	U35_14944	420	1e-24	360 - 418	100	59 / 59	plus

Contig Sequence (634 bp)

>U35_14943 634 Hv_44K_v2
GGGGCAGCTCACAAGCGCGGTGCTCCACTCCACCAAAGAAAACACAGCAAACGCCAATGG
CGTCCTGCAGCCAGCACCTCCTCTCAGCCGTCGCCATCTTCTCCGTCCTGGCCGGCGTCG
CGACCGCCACCAGCATCTACACCTGCTACGAAGGGATGGGTCTCCCCGTCAACCCGCTCC
AGGGCTGCCGTTTCTACGTGGCCTCGCAGACCTGCGGCGCCGTGCCGCTGCTCCCCATCG
AGGTGATGAAGGACTGGTGCTGCCGGGAGCTGGCCGGCATCTCGTCCAACTGCCGCTGCG
AGGGGCTGCGCGTCTTCATCGACCGGGCGTTCCCTCCCAGTCAAAGCCAAGGCGCGCCCC
CTCAGCTGCCGCCGCTGGCGACCGAGTGCCCCGCGGAGGTGAAGAGGGACTTCGCCAGAA
CGCTCGCCCTGCCCGGGCAGTGCAACCTGCCGACCATCCATGGAGGCGCCTACTGCGTCT
TCCCATGAACGCTAGTTAGTTCATTGGGTCGTCGTGTGAATGAATGAATAAGCAGCATGT
CGCGTTCGTGGATGCAGAAGTGCACAAGTGCAAAATAAAGTGAATCTTTCGGTGGTTCTT
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14943 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None