- Probe CUST_4568_PI390587928
- Source Contig U35_14944
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4568_PI390587928 | Hv_44K_v2 | GCGTTCGTGGATGCAGAAGTGCACAAGTGCAAAATAAAGTGAATCTTTCGGTGGTTCTAA | 360 | GeneList: midnightblue MasterList: Pathogenesis_Function_Probe_Module |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.012 | 0.041 | 0.894 | 0.986 | 1.795 | 1.939 |
| Raw | 694.181 | 6086.453 | 120928.400 | 171730.333 | 126004.333 | 153271.000 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_65014.1 | 935 | 2e-23 | 180 - 237 | 100 | 58 / 58 | minus | ABC02052 ABC02053 |
| JLOC1 | JLOC1_42746.1 | 845 | 1e-23 | 100 - 157 | 100 | 58 / 58 | minus | |
| Harvest21 | ABC02052 | 453 | 3e-25 | 361 - 420 | 100 | 60 / 60 | plus | ABC02052 |
| Harvest21 | ABC02053 | 639 | 4e-24 | 541 - 598 | 100 | 58 / 58 | plus | ABC02053 |
| Harvest35 | U35_14944 | 420 | 3e-25 | 361 - 420 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14943 | 634 | 4e-24 | 542 - 599 | 100 | 58 / 58 | plus |
Contig Sequence (420 bp)
>U35_14944 420 Hv_44K_v2 CGCGACCGCCACCAGCATCTACACCTGCTACGAAGGGATGGGTCTCCCCGTCAACCCGCT CCAGGGCTGCCGTTTCTACGTGGCCTCGCAGACCTGCGGCGCCGTGCCGCTGCTCCCCAT CGAGGTGATGAAGGACTGGTGCTGCCGGGAGCTGGCCGGCATCTCGTCCATCTCGCCCCC TCAGCTGCCGCCGCTGGCGACCGAGTGCCCTGCGGAGGTGAAGAGGGACTTCGCCAGAAC GCTCGCCCTGCCCGGGCAGTGCAACCTGCCGACCATCCATGGAGGCGCCTACTGCGTCTT CCCATGAACGCTAGTTAGTTCATTGGGTCGTCGTGTGAATGAATGAATAAGCAGCATGTC GCGTTCGTGGATGCAGAAGTGCACAAGTGCAAAATAAAGTGAATCTTTCGGTGGTTCTAA
Homology of Contig U35_14944 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |