barSeed - Barley Seed Development Database

Probe CUST_4567_PI390587928

Source Contig U35_14945

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4567_PI390587928	Hv_44K_v2	GACCAAACCTAATTCTCTCCTCGTGTCATTTGCTTTACTTCGGTTCAGTTTATACCTGTT	2214	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.066	2.015	1.347	0.789	0.309	0.283
Raw	68.095	72.909	41.728	38.175	3.589	4.144

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373820	2120	2e-24	1960 - 2019	100	60 / 60	plus	ABC01760
MLOC	MLOC_81497.1	278	2e-24	99 - 158	100	60 / 60	minus	ABC01760
JLOC1	JLOC1_54215.1	283	8e-25	104 - 163	100	60 / 60	minus
Harvest21	ABC01756	1803	3e-25	1704 - 1763	100	60 / 60	plus
Harvest21	ABC01754	1688	3e-25	1536 - 1595	100	60 / 60	plus
Harvest35	U35_14945	2314	3e-25	2215 - 2274	100	60 / 60	plus

Contig Sequence (2314 bp)

>U35_14945 2314 Hv_44K_v2
CCACACCCATCTGATGCCAACACCCCTCCCGCCATGCTGCCCTTCTGCTCCGCCGCGCCC
ACCCCATGCTCCCCCCTCTGCCCGGTGACCGCGGCCGGCGCGCGGGCGCTGCGGAGGGTC
GATGCCAGCGCGCTCAGGTCCTTCGCCGCCGACCCGCTCGTCGCGCAGGCCGTGCCCGAC
CGCCCGCTCTTCTCCGACTCCGCCATCCTCTCCCCCTACGCCACCGCGCCGGACGATATC
GTGCGGGGGTTCGCGTCCGCCGCCGAGCTGCCCGACCCTCTCTGGCGCGCCGGGGTCGAC
CCGCCGCTGATGCCCGTCTCCGCCGACCTGGCCGCGGACGCTCTGCTCGGCGCGGTCACC
GACGATGCCGCGCAGCAGGCCCTGATGGACGCGGACATGCCCACCACGTTCCCAGCCGAC
GCGACCGGCGTCGAGGAGTCCGTGGCCCGGTTCATCGACAAGCTCAGCAAGCAGATATTC
CAGGCGGAGGACGCGCTCACCGAAGGGTACGACAAGCTCAAGCTGTCGGCGTACGACGCC
CTCGGGGCCTACAGGAGGGCGATAAGGGGCGTCGCTGGTGGCCTCACGTCCTCGGTAGCC
GCCACCAAGAAGCAGGCCGCCGGTGGGGTCCCGGACGTTTCCGGTGCATTTCAGGATAAG
GTGGCCGGAGCTGGTGCGGTGGCGGCCGACGTTCTTAGGAAGGCAATTGTTGTAGCAGAG
GATTCACTGGGCAGTGCAACCACGTCCCTCGTATACTACTATGGCTCGGCCAAGTCGTCA
TTGCCACCAAATGTCAAAGATTTGCTGGACTCATCCGAGGAGAAAGCTAACATAGTATTG
CGACCAATTGGAAGTGCCCTTCAACAGGTATACATTATCATTGAAGGCATCGAAAAGAAT
GTTGGTTTGAACCCAAGTGACCCAATTGTTCAATTGGCAGTTTTGCTTGGAGGTTCAACA
ACAATAGGGATATCTTACTGGCTCTTCGCGTATGGCGGCTATTCTGGAGACTTGTCACCT
GAATCGACATTGGAGCTATTGAAAAGTGATGGCAAAGCCGTACTTATTGATGTTCGGCCT
GAGGACTTGAGGGTGAAAGATGGAATTCCTGACCTACGCCGTGCAGCTAGATCTAAATAT
GCAAGCGTTGCTTCGCCTGAGATCAAAGGTCCAACAAAGAAGCTACTTAAAGGTGGAAAC
GAAATTGATGATGCTTTGGTTGCAGTTGTAATCCGCAACTTGAAGTTGGTCAAGGGTGAT
TCAAAGGTCATCATTATGGATGCTAATGGAACCAGATCAAAGTCCATTGCTAGGCTACTG
AAGAAGCTTGGTGTGCAGCAACCTTACCTGGTTAAAGGTGGTTTCCAATCTTGGTCAAAG
AATCTTCGCGTGAAAGAACTGAAACCTGAGACTGCATTGACAGTAATAAATGAGGATGCT
GAGGAAATCCTTGAAGGCATAAAGCCCACCCCTACACTTGTCTTTGGATCTCTTCTGGGC
CTCTCAGCAGTGACTTATGCCTTGCTAGAATGGGAGACGACTTTGCAGTACATCGGTGTT
CTTAGTCTTGGGTTGACGATCTACCTACGGTTCTCTACATATGAGGGTTCGGAGGATTTC
CTGCAAGACCTAAAGCTGTTGCTATCCCCAGTAAGAGTGGGCGCGGAAGCGCTCTCCTGG
GCAGCTAAGAAGCTAGAGCCGAACAAGATTGGCCTGGCGACGTCCCCATCCACGACGGCA
GTGCAGGACCGGGTTCTCAAAGCGGCAGCAAAGCATGAATCAAAGCCATCTGATGTGGAG
GAGTCCAACAAGACAGACAATTTTGCCTCCGAGGCATGAGAAGCTCCCTGTGAGCGTGTG
AACTGAAACCGTAGCCACTTCGCCATCAGTCTGGCGAATTGATGTTTCTGATGTTAGTAA
TGGTACCATGAGCCGCCGTGACGACGACCGGCATTGTAAATTTATAAGCAGCAGTTTATA
TTAAACACTTGTTAGCAAAAAAAGGAAGGAGGCTGACTTCACCACGGACGACATGATCCT
CGGCAAGAAGCTCGTGAGCGTCTGAGGCGTGCATGGACGGGCACATGGCTCATGGCTCAT
GGCAGTGCAAAGCGTGTGGCAACAGCGTGTGTGGCGTGCATATGTAGCACAGGGAAGACG
ATCTCAGTTTTGGGATGTAGGTTGAGGTTCACTCATCCGATGAAATGTACTGCTGACCAA
ACCTAATTCTCTCCTCGTGTCATTTGCTTTACTTCGGTTCAGTTTATACCTGTTTTTTTT
TTGATACATAATAGATCGGTTTTCTAAGATCGGA

Homology of Contig U35_14945 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67120.1	624	0.0	protein\|rhodanese-like domain containing protein, putative, expressed
Brachypodium v1_2	Bradi2g57590.1	610	0.0
Arabidopsis v10	AT3G59780.1	686	6e-142	Rhodanese/Cell cycle control phosphatase superfamily protein \| chr3:22086906-22090324 FORWARD LENGTH=686