barSeed - Barley Seed Development Database

Probe CUST_4566_PI390587928

Source Contig U35_14946

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4566_PI390587928	Hv_44K_v2	CTGACACCTAATTCTCTCCTCGTGTCATTTGCTTTACTTCGGTTCAGTTTATACGTGGTT	1305	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.100	1.512	1.242	0.912	0.264	0.305
Raw	80.532	62.522	45.566	53.316	3.196	6.029

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_14946	1395	3e-25	1306 - 1365	100	60 / 60	plus

Contig Sequence (1395 bp)

>U35_14946 1395 Hv_44K_v2
CGAAGCATCTCTAATATGGCTCCCCTGGTCTTTTATATCTGCTGGTTAAAAGTTAAAACC
CAAGATATCTTTTGAGGTTCGGAGTAGTTGTTTACTAGAGCAGACTCCAAGAACATTCTG
ATCACGGGGGGCACCAGGTTCGTTGGTCTCTTCCTGTCCAGGAAACTTGTCCAGGAGGGA
CACCAGGTCACATTGTTCACCAGAGGAAAGGCACCCATAACCCAGCAGTTGCCAGGTGAA
TCAGATGCAGAGTATGTAGAGTTCTCTTCCAAGGTGCTGCATTTGAAAGGTGATAGGAAA
GACTTTGATTTCGTCAAGACAAGCCTTTCTGCTAAGGGCTTTAATGTCGTCTATGATATT
AATGGACGCGAGGCCACTGAAGTATCCCCCATACTAGAAGCGTTGCCAAACCTGGAACAA
TAAGCTGGTTACTTTTTCGGATGCAAAACAAGATATTTGCAAATTCAGTGCCCTGAACTA
TCTAGCATTCTGGTACTATTTTCAGGTTTATCTATTGCTCATCGGCAGGAGTCTACCTTA
AGTCAGACCTGCTCCCACACTTTGAGACCGACGTTGTGGACCCAAAAAGCCGGCATAAGG
GAAAGCTGGAGACACAGAGCCTGCTGGAGACGAGCGGCGTGAACTGGACGTCCATCAGAC
CGGTCTACATCTACGACCCTCTCAACTACAACCCCGTGGAGGAGTGGTTCTTCCACCGGC
TCAAGGCTGGTCGCCCGATCCCCATCCCTAACGCTGGGAACCAGATCACCCAGCTCGGCC
ATGTAAAGGATTTGGCGACGGCCTTCATCAAGGTCCTCGGCAACCCCAAGGCGAGCAAGC
AGGTGTACAACATCTCCGACAACAAGTATGTCACCTTCGACGGGATAGCACGGGCATGCG
CAAAGGCTGGAGGGTTCCCTGAGCCGGAGATCATCCACTACAACCCCAAGGACTTCGATT
TCGGCAAGAAGAAGGCCTTCCCCTTCAGAGACCAGCATTTCTTCGCGTCGGTGGAGAAGG
CCAGCAAGGACCTCGGGGTTACGCCGGAGTACGACCTCCTCGACGGCTTGACGGACTCGT
ACAACCTTGACTTCGACCGCGGGACCTTCAGGAAGGAGGCTGACTTCACCACATACGACA
TGATCCTCGGCAAGAAGCTCGTGAGCGTCCGAGGCATGCATGGACGGGCTCATGGTAGTG
CAAAGCGTGTGGCAACAGCGTGTGCGGCGTGCATATGTAGCACACGGAAGACGATCTCAG
TTTTGGGATGTAGGTTGAGGTTCACTCATCCGATGAAATGTACTGCTGACACCTAATTCT
CTCCTCGTGTCATTTGCTTTACTTCGGTTCAGTTTATACGTGGTTTTCTTTTTGTAATAA
AAAAAAAAAAAAAAA

Homology of Contig U35_14946 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g23180.1	377	1e-165	protein\|3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed
Brachypodium v1_2	Bradi4g08030.1	379	6e-172
Arabidopsis v10	AT1G09340.1	378	2e-153	\| Symbols: CRB, CSP41B, HIP1.3 \| chloroplast RNA binding \| chr1:3015473-3018035 FORWARD LENGTH=378