barSeed - Barley Seed Development Database

Probe CUST_4565_PI390587928

Source Contig U35_14947

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4565_PI390587928	Hv_44K_v2	GAGGTTCACTCATCCGATGAAATGTACTGCTGACCAAACCTAATTCTCTCCTCGTGTAAA	1393	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.280	2.322	1.202	0.781	0.248	0.240
Raw	135.986	159.370	68.345	72.165	7.119	7.895

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373820	2120	7e-23	1929 - 1985	100	57 / 57	plus	ABC01760
MLOC	MLOC_81497.1	278	7e-23	133 - 189	100	57 / 57	minus	ABC01760
JLOC1	JLOC1_54215.1	283	4e-23	138 - 194	100	57 / 57	minus
Harvest21	ABC01756	1803	1e-23	1673 - 1729	100	57 / 57	plus
Harvest21	ABC01754	1688	1e-23	1505 - 1561	100	57 / 57	plus
Harvest21	ABC01760	860	6e-22	60 - 116	98	56 / 57	minus	ABC01760
Harvest35	U35_14947	1592	3e-25	1394 - 1453	100	60 / 60	plus
Harvest35	U35_14945	2314	1e-23	2184 - 2240	100	57 / 57	plus

Contig Sequence (1592 bp)

>U35_14947 1592 Hv_44K_v2
CCCATTAGCACGCACCGAACCAAAGTTTCAGGCAAGAGATATACTGCCATCCTGGACAGG
CAAACAAAGCCCTCTCCTCTTGTTTACACTTCATCTTTTTAGTAGCACAATCGCAGGGAG
GGGACAGAGAAGGGAAGAGAGATGGCGGCGGCAAGCGTCTCCCTGAAGAGCAGCCTCTTC
CTGTCTTCCCCCCTTTCCGACTTCGGCGGCGCGGCCATCTCCATCTCAGCCCAGAATAGG
AGACGGTCATGGCAGCCGAGGGGGGCGAGAATGCAGGTGGCAGCAGCTGCAGACTCCAAG
AACATTCTGATCATGGGGGGCACGAGGTTCATTGGTCTCTTCCTGTCCAGGAAACTTGTC
CAGGAGGGACACCAGGTCACATTGTTCACCAGAGGAAAGGCACCCATAACCCAGCAGTTG
CCAGGTGAATCAGATGCAGAGTATGCAGAGTTCTCTTCCAAGGTGCTGCATTTGAAAGGT
GATAGGAAAGACTTTGATTTCGTCAAGACCAGCCTTTCTGCTAAGGGCTTTAATGTCGTC
TATGATATTAATGGACGCGAGGCCACTGAAGTATCCCCCATACTAGAAGCGTTGCCAAAC
CTGGAACAGTTTATCTATTGCTCATCGGCAGGAGTCTACCTTAAGTCAGACCTGCTCCCA
CACTTTGAGACCGACGCTGTGGACCCGAAAAGCCGGCATAAGGGAAAGCTGGAGACAGAG
AGCCTGCTGGAGACGAGCGGCGTGAACTGGACGTCCATCAGACCGGTCTACATCTACGGC
CCTCTCAACTACAACCCTGTGGAGGAGTGGTTCTTCCACCGGCTCAAGGCTGGTCGCCCG
ATCCCCATCCCTAACGCTGGGAACCAGATCACCCAGCTCGGCCATGTCAAGGATTTGGCG
ACGGCCTTCATCAAGGTCCTCGGCAACCCCAAGGCGAGCAAGCAGGTGTACAACATCTCC
GGCAGCAAGTATGTCACCTTCGATGGGCTAGCACGGGCATGCGCAAAGGCTGGAGGGTTC
CCTGAGCCGGAGATCATCCACTACAACCCCAAGGACTTCGATTTCGGCAAGAAGAAGGCC
TTCCCCTTCAGAGACCAGCATTTCTTTGCGTCTGTGGAGAAGGCCAGCAAGGACCTCGGG
GTTACGCCGGAGTACGACCTCCTCGACGGCTTGACGGACTCGTACAACCTCGACTTCGGC
CGCGGGACCTTCAGAAAGGAGGCTGACTTCACCACGGACGACATGATCCTCGGCAAGAAG
CTCGTGAGCGTCTGAGGCGTGCATGGATGGGCACATGGCTCATGGCTCATGGCAGTGCAA
AGCGTGTGGCAACAGCGTGTGCGGCGTGCATATGTAGCACAGGGAAGACGATCTCAGTTT
TGGGATGTAGGTTGAGGTTCACTCATCCGATGAAATGTACTGCTGACCAAACCTAATTCT
CTCCTCGTGTAAAAAAAAAAAAAAATTTGTTTTACTTCGGTTCAGTTTATACCTGTTTTT
TTTTGTAATAATATATCGGTTTTCTAAGATCGGAACTGAATTTGACCACTCAAGATTTTA
AAATCAAATCTAGTGATAGAAACATTTCGTTA

Homology of Contig U35_14947 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g23180.1	377	protein\|3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed
Brachypodium v1_2	Bradi4g08030.1	379
Arabidopsis v10	AT1G09340.1	378	\| Symbols: CRB, CSP41B, HIP1.3 \| chloroplast RNA binding \| chr1:3015473-3018035 FORWARD LENGTH=378