barSeed - Barley Seed Development Database

Probe CUST_4563_PI390587928

Source Contig U35_14949

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4563_PI390587928	Hv_44K_v2	GAGGTTCACTCATCCGATGAAATGTACTGCTGACCAAATCTAATTCTCTCCTCGGTGTCA	901	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.032	2.481	1.182	0.695	0.200	0.214
Raw	144.522	193.359	76.264	74.318	6.780	7.890

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_54215.1	283	6e-21	136 - 194	97	58 / 60	minus
Harvest21	ABC01761	1248	1e-23	1 - 60	98	59 / 60	minus
Harvest21	ABC01760	860	5e-23	58 - 116	98	59 / 60	minus	ABC01760
Harvest21	ABC01756	1803	2e-21	1673 - 1731	97	58 / 60	plus
Harvest21	ABC01754	1688	2e-21	1505 - 1563	97	58 / 60	plus
Harvest35	U35_14949	961	3e-25	902 - 961	100	60 / 60	plus
Harvest35	U35_14945	2314	2e-21	2184 - 2242	97	58 / 60	plus

Contig Sequence (961 bp)

>U35_14949 961 Hv_44K_v2
GACACCAGGTCACATTGTTCACCAGAGGAAAGGCACCCATAACCCAGCAGTTGCCAGGTG
AATCAGATGCAGAGTATGCAGAGTTCTCTTCCAAGGTGCTGCATTTGAAAGGTGATAGGA
AAGACTTTGATTTCGTCAAGACCAGGGGGGGTGCTAAGGGCTTTAATGTCGTCTATGATA
TTAATGGACGCGAGGCCACTGAAGTATCCCCCATACTAGAAGCGTTGCCAAACCTGGAAC
AGTTTATCTATTGCTCATCGGCAGGAGTCTACCTTAAGTCAGACCTGCTCCCACACTTTG
AGACCGACGCTGTGGACCCGAAAAGCCGGCATAAGGGAAAGCTGGAGACAGAGAGCCTGC
TGGAGACGAGCGGCGTGAACTGGACGTCCATCAGACCGGTCTACATCTACGGCCTTCATC
AAGGTCCTCGGCAACCCCAAGGCGAGCAAGCAGGTGTACAACATCTCCGGCAGCAAGTAT
GTCACCTTCGATGGGCTAGCACGGGCATGCGCAAAGGCTGGAGGGTTCCCTGAGCCGGAG
ATCATCCACTACAACCCCAAGGACTTCGATTTCGGCAAGAAGAAGGCCTTCCCCTTCAGA
GACCAGCATTTCTTCGCGTCTGTGGAGAAGGCCAGCAAGGACCTCGGGGTTACGCCGGAG
TACGACCTCCTCGACGGCTTGACGGACTCGTACAACCTCGACTTCGGCCGCGGGACCTTC
AGAAAGGAGGCTGACTTCACCACGGACGACATGATCCTCGGCAAGAAGCTCGTGAGCGTC
TGAGGCGTGCATGGATGGGCACATGGCTCATGGCTCATGGCAGTGCAAAGCGTGTGGCAA
CAGCGTGTGCGGCGTGCATATGTAGCACAGGGAAGACGATCTCAGTTTTGGGATGTAGGT
TGAGGTTCACTCATCCGATGAAATGTACTGCTGACCAAATCTAATTCTCTCCTCGGTGTC
A

Homology of Contig U35_14949 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g23180.1	377	4e-132	protein\|3-beta hydroxysteroid dehydrogenase/isomerase family protein, putative, expressed
Brachypodium v1_2	Bradi4g08030.1	379	2e-138
Arabidopsis v10	AT1G09340.1	378	4e-122	\| Symbols: CRB, CSP41B, HIP1.3 \| chloroplast RNA binding \| chr1:3015473-3018035 FORWARD LENGTH=378