barSeed - Barley Seed Development Database

Probe CUST_4560_PI390587928

Source Contig U35_26924

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4560_PI390587928	Hv_44K_v2	GTACACACTCCATAACACAGACCGGTGGAAGGACTTGAACCCAAAGTTTGTACTACAAGT	1077	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370601	3881	2e-24	2740 - 2799	100	60 / 60	plus	ABC13060
MLOC	MLOC_53162.7	2128	2e-24	973 - 1032	100	60 / 60	plus	ABC13060
MLOC	MLOC_53162.6	2389	2e-24	1242 - 1301	100	60 / 60	plus	ABC13060
MLOC	MLOC_53162.3	3836	2e-24	2689 - 2748	100	60 / 60	plus	ABC13060
MLOC	MLOC_53162.1	2731	2e-24	1576 - 1635	100	60 / 60	plus	ABC13060
MLOC	MLOC_53162.5	2665	2e-24	1525 - 1584	100	60 / 60	plus	ABC13060
MLOC	MLOC_53162.4	2635	2e-24	1465 - 1524	100	60 / 60	plus	ABC13060
MLOC	MLOC_53162.2	3658	2e-24	2605 - 2664	100	60 / 60	plus	ABC13060
JLOC1	JLOC1_34125.1	2661	8e-25	1491 - 1550	100	60 / 60	plus
Harvest35	U35_26924	1137	3e-25	1078 - 1137	100	60 / 60	plus

Contig Sequence (1137 bp)

>U35_26924 1137 Hv_44K_v2
GAGGTGAAATCATTCTAATTCTAGTATGACAGAAAAGGATGGCGTGCATGGTATACTGTT
ACACCACAGAACAGCTGATGGACGGCCACCGGTAGCTTTTGCCATAGCTGCACAAGAGAA
AGAGGATATTCATATCTCTGAATGCCCTTACTTTGTGATGTCCGGTAGCTCTGATGAATT
CACAGCAAAAGATATGTGGAATTCAGTGAAAGAGCATGGATCTTTTGATCTTCTTGATCC
CGTCAAAGAATCGACGTCCTCCAGACCAGGAACATCAATAGGAGCAGCTATTGCAGCTTC
AATTAAGCTTGCTCCCCAGGCAACCCAGAATGTTTCGTTTTCACTTGCTTGGGCTTCCCC
TGAAGTAAAGTTTTGCAGTGGAAAAACCTACCATAGGCGTTATACAAAATTTTATGGCAC
AGATGTTGATGCAGCTGCAAGCCTTGCCCATGATGCCATTCTTGATCATAGTTCCTGGGA
AACGCAAATTGAGAATTGGCAGCATCCTATTTTGCAAGACAAGAGGTTTCCTGCATGGTA
TCCTGTCACACTATTCAATGAACTTTATTATCTTAATGCTGGAGGAACTATATGGACTGA
TGGATTGCCACCAATTCAAAGCTTAACAGCAATTGGGGGGAAAAAGTTTTCTCTTGACAT
GTCAAATGAAGAAACAGATGATGACAGTCAGATGAACCCACAGACTAATACTGCCACTGA
TATTCTTCATCAAATGGCATCAGTACTTGAGAGAATTCATGCATCTCTTGCATCAAGTTC
TGCTATAGGGACAACGTTGCTTCAGGGTGAAGAGAACATTGGCCAGTTTCTGTACCTTGA
GGGAATTGAATACTATATGTGGAACACATATGATGTTCATTTCTATTCATCTTTTTCACT
TATCATGCTATTTCCAAAACTTCAACTCAGCGTTCAGAGAGACTTCGCTGCCGCTGTCAT
GATCCACGACCCTGAAAAGCTCAAGCTCTTACATGATGGAAAATTGGCTGCAAGAAAAGT
TCTTGGAGCTGTTCCTCATGATCTTGGTCTATATGACCCTTGGATCAAAGTGAATGCGTA
CACACTCCATAACACAGACCGGTGGAAGGACTTGAACCCAAAGTTTGTACTACAAGT

Homology of Contig U35_26924 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g13810.1	951	0.0	protein\|non-lysosomal glucosylceramidase, putative, expressed
Brachypodium v1_2	Bradi4g21277.1	954	0.0
Arabidopsis v10	AT5G49900.1	957	1e-162	Beta-glucosidase, GBA2 type family protein \| chr5:20297235-20302019 REVERSE LENGTH=957