barSeed - Barley Seed Development Database

Probe CUST_4558_PI390587928

Source Contig U35_26926

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4558_PI390587928	Hv_44K_v2	GCATGTTCAGAAATGTATGGAAGACCCAACTATCAGCTTGCTTGTACGACGAGTATCAAA	580	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_80251.6	2481	6e-24	1370 - 1428	100	59 / 59	minus	ABC12017 ABC44342
MLOC	MLOC_80252.1	2468	6e-24	1357 - 1415	100	59 / 59	minus	ABC12017 ABC44342
MLOC	MLOC_80251.5	3110	6e-24	1830 - 1888	100	59 / 59	minus	ABC12017 ABC44342
MLOC	MLOC_80251.1	3783	6e-24	2496 - 2554	100	59 / 59	minus	ABC12017 ABC44342
MLOC	MLOC_80252.2	2375	6e-24	1264 - 1322	100	59 / 59	minus	ABC12017 ABC44342
MLOC	MLOC_80251.2	3686	6e-24	2399 - 2457	100	59 / 59	minus	ABC12017 ABC44342
JLOC1	JLOC1_53435.6	3500	3e-24	2205 - 2263	100	59 / 59	minus
JLOC1	JLOC1_53435.5	3428	3e-24	2133 - 2191	100	59 / 59	minus
JLOC1	JLOC1_53435.4	3472	3e-24	2177 - 2235	100	59 / 59	minus
JLOC1	JLOC1_53435.3	3726	3e-24	2431 - 2489	100	59 / 59	minus
JLOC1	JLOC1_53435.2	3456	3e-24	2161 - 2219	100	59 / 59	minus
JLOC1	JLOC1_53435.1	3698	3e-24	2403 - 2461	100	59 / 59	minus
Harvest35	U35_26926	654	3e-25	581 - 640	100	60 / 60	plus

Contig Sequence (654 bp)

>U35_26926 654 Hv_44K_v2
GCATCCTTAAGATGGCAAAGAATTTTACCAAGAAGAGTGACGCCGATGCTATCAGACTGG
CGGTGAAATCTTTGCGGAAGGAAGCAAGGTCATGGTTCAGTGAGATGGGTTCAGATGAGA
GCGGAGATGGCCACAAGGCCTTGGTCGCCAAGGCATCCGCTTGGTATCATGTTACCTATC
ACCCACAGTACTGGGGTTGTTACAATAAAGGATATGATCACCGGCCACACCTCATCAGTT
TTCCATGGTGTGTCTATGACAAGCTGATTCTCATCAAGCAGAAGAAGAACATTGCCAGGA
AGATGCTCGATCTCCAGAACAGAATGAGACGGAACACAATATTGGGCTGAGTGCGACCAT
CAGGTCGTTGTTGGTCTTGTACATATATTTGAACATGTCGACTCTTGTGCTAGAATGATC
GCCCAAGTGCGATTGTGATTGTTAACTCAGATGTGTTGACGTACATGTGGCGACGAAGCA
CGAACCTTGGGGGTCTTTGGATGCAGTCGTCGAATGTATTTCTGTGGTATGATCTGTGGC
GTACCTAGTTTTCCCCTGCCTTTTTGGTAATATGCGTACTGCATGTTCAGAAATGTATGG
AAGACCCAACTATCAGCTTGCTTGTACGACGAGTATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_26926 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g59910.1	987	4e-55
Arabidopsis v10	None