barSeed - Barley Seed Development Database

Probe CUST_4556_PI390587928

Source Contig U35_26928

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4556_PI390587928	Hv_44K_v2	TGGTACAACTTCAATAGTCTGTATCTGGCCCCTGAGCACCTCTCTCAGTTTTTACTCTCA	626	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.783	2.829	1.252	0.700	0.502	0.381
Raw	68.648	82.127	29.643	27.645	5.822	4.675

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54449.5	1380	2e-24	588 - 647	100	60 / 60	plus	None
MLOC	MLOC_54449.3	1644	2e-24	852 - 911	100	60 / 60	plus	None
MLOC	MLOC_54449.2	1502	2e-24	777 - 836	100	60 / 60	plus	None
MLOC	MLOC_54449.1	1633	2e-24	889 - 948	100	60 / 60	plus	None
JLOC1	JLOC1_35046.1	1519	8e-25	767 - 826	100	60 / 60	plus
Harvest21	ABC22807	733	3e-25	627 - 686	100	60 / 60	plus
Harvest35	U35_26928	733	3e-25	627 - 686	100	60 / 60	plus

Contig Sequence (733 bp)

>U35_26928 733 Hv_44K_v2
GCTCGCGCCCGGAACAAAGCGTGGCGGGCGCTCGCTCGCCACGCAGCCTACTCCGCGCTA
ACGGCCGCGCGCCTCCACCAGGACCACAACCCAGCGCCGCTCAGCGCTGCCCTTCCCACG
ACGCCGGCTATAAATCAGCCCGATGGCCGGGGCGCTCTTCGCACTCAGTCGGATCGGGGA
GGGAGCCGCCGGAGTTCTTCTGAAGGGAGGACGGGGGGATGGACGCCGGGACGGGGAACT
CGGGTATGCTGTACCACGAGCTGCAGGCGCGGCAGCTCTGCGGGCTCCATGCCCTCAACG
CGGCGTTGCAGGGCCCGTTCTTCAGCGAGGGGGACCTCCTGCAGATCGCGGCGGACCTCG
ACGCCCGCGAGCGGGAGGTCATGTCCGCCGCCGGCACCGTGGGCGCGGGGGATTTCCTCG
CCGAGGGCGAGGGATCCCACAACGTCTCCAACAGCGGGGACTTCAGCGTTGAGGTTTTGA
AGAGGGCACTAGAGGTATGGAACCTTCAGTTTATCTCCATGTATTCCCAAGCTGCAGCGG
GAGCCCAATCCAATCCTGAACTGGAAACTGCCTTCATCTGCCACTTCCAAAACCACTGGT
TCTGCATTAGGAATGTGGATGGGGAATGGTACAACTTCAATAGTCTGTATCTGGCCCCTG
AGCACCTCTCTCAGTTTTTACTCTCAGCTTACCTTGACAGCATGAGGGGGCCTGGCTCGA
ACATCTATGTAGT

Homology of Contig U35_26928 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g63250.1	337	2e-70	protein\|josephin, putative, expressed
Brachypodium v1_2	Bradi2g55100.1	320	5e-71
Arabidopsis v10	AT3G54130.1	280	1e-65	Josephin family protein \| chr3:20042895-20044429 REVERSE LENGTH=280