barSeed - Barley Seed Development Database

Probe CUST_4552_PI390587928

Source Contig U35_38902

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4552_PI390587928	Hv_44K_v2	TTCACTTGCTCCTGCAGACGAAGAGACACTCTTGAAGGTAAAAGAGGAAGTTTCTAGTCC	488	GeneList: darkorange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.888	1.087	2.424	2.271	0.702	0.515
Raw	24.500	44.561	91.057	130.702	14.764	11.921

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77192.3	2739	2e-24	2159 - 2218	100	60 / 60	plus	None
MLOC	MLOC_77192.1	4329	2e-24	3751 - 3810	100	60 / 60	plus	None
JLOC1	JLOC1_51485.2	3304	8e-25	2724 - 2783	100	60 / 60	plus
JLOC1	JLOC1_51485.1	4217	8e-25	3637 - 3696	100	60 / 60	plus
Harvest21	ABC34876	640	3e-25	489 - 548	100	60 / 60	plus
Harvest35	U35_38902	640	3e-25	489 - 548	100	60 / 60	plus

Contig Sequence (640 bp)

>U35_38902 640 Hv_44K_v2
AGGAGCAAGTGATGCTGAGAAGATAGGGAAGATACCCCCTACAGCGCTAGCTTCTTGACT
GATTTTTTGAAGAGTGCTCGTGTCTGTACTTCTGATGTGGAGGAGGCAGCCAACACAGAC
TGCCGTGCTTCTAGTCCCGGTGCTGACGAGGAGATACCTGAGAAGGCAGCAGCAGACAGA
ATTTCTAGTACCCATGCGGACTTGGAGGTGCCTGAGGAGGCAGCAAAGAAAGTATCTAGT
CCGAGTGCCGATGAGGCGATACCCGAGGAGGCAGCAGAGGAAGTATCTAGTCCCAATGCT
GATGAGGTGATACCCGAGAAGGCAGCAGATGAAGTTTCTAGTGCCCCTGCTGATGAGGCG
ATACCTGAGAAGGAAGCAGAAAAAGTTTCTAGTCCCCATGCTGACGAGGCGATACCTGAG
AAGATAGCAGATGAAGTTTCTGGCCCCAATGCTGATCAGGTGATACCTGAGAAAGCAGCA
GATGAAGTTTCACTTGCTCCTGCAGACGAAGAGACACTCTTGAAGGTAAAAGAGGAAGTT
TCTAGTCCCCACGCTGACGAGGCGATACCTGAGAAGGCAGCAGATGAAGTTTCACTTGAG
GAGGCAGCAGAGAAAGTTCCTGGCCCCCATGCTGATGAGC

Homology of Contig U35_38902 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None