barSeed - Barley Seed Development Database

Probe CUST_4549_PI390587928

Source Contig U35_38907

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4549_PI390587928	Hv_44K_v2	TAAAAAATAGCACAAGTGATCTAGCTGATGCTAAGTCCATCTGCCTGATGGAATGCCCCT	458	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_58513.4	2956	2e-23	2726 - 2783	100	58 / 58	plus	ABC10101
MLOC	MLOC_58511.2	2198	2e-23	255 - 312	100	58 / 58	plus	ABC10526 ABC21170
MLOC	MLOC_58511.1	3152	2e-23	1249 - 1306	100	58 / 58	plus	ABC10101 ABC10526 ABC21170
JLOC1	JLOC1_38024.2	2744	1e-23	247 - 304	100	58 / 58	plus
JLOC1	JLOC1_38024.1	3270	1e-23	773 - 830	100	58 / 58	plus
Harvest21	ABC34881	630	3e-25	459 - 518	100	60 / 60	plus
Harvest35	U35_38907	630	3e-25	459 - 518	100	60 / 60	plus

Contig Sequence (630 bp)

>U35_38907 630 Hv_44K_v2
GGAANGCACGCAAGCGGCAGCAGCACTTTTCCCCCCCCCCCCCCCCTCCCCGCTCCTGTG
ACCCGAGGAGGAAGAAGAAGGAGGCGGCAAGCCGGCGACCCACCTCAGTTTGAGGAGAGC
TGAGCTGTGGCAAGGCGTAATGCGGGGGCCCCTCGGCCGCGACGCGTCCGCCGGCGGCGC
CGGAGGAGGGAAAGGAGGAGACGACGACGACGCCGCAGCCGGCATCATTCGCCACGACCG
CAAGTGCCGGGACCTGCCGTTCCTCGCCCTCTTCGCCGCCTTCTGGGTCGCCATGATTGT
CAACTCCAGCTTCGGGTTCAACCAGGGCAGCCCGCTCAGGCTGACTTACGGACTGGACTA
CAAAGGGAACATATGTGGCAGCAAACGCGGTGATCCAGATTTGAGTGAGCTGGATGTTCG
TTACTGGCTGAACCCCAACCAGGTGTACCAAAGTGGGCTAAAAAATAGCACAAGTGATCT
AGCTGATGCTAAGTCCATCTGCCTGATGGAATGCCCCTATCCCGCGGAAGATGGCCTGAA
CTTTGTTTGCGATTATCCGGAAGGTGACATACGGCTCTCTGTCGATGATTGGATCGACAG
GGACTACGATTACTTCGAGTATCTCACACC

Homology of Contig U35_38907 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g58470.1	712	8e-79	protein\|choline transporter-related, putative, expressed
Brachypodium v1_2	Bradi3g12950.2	573	2e-85
Arabidopsis v10	AT3G15380.1	700	4e-66	Plasma-membrane choline transporter family protein \| chr3:5193319-5196435 FORWARD LENGTH=700