barSeed - Barley Seed Development Database

Probe CUST_4543_PI390587928

Source Contig U35_14953

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4543_PI390587928	Hv_44K_v2	GACACGTGCGTAAATTAAGGGCATGATTGAGTTCCTAGATATGCATCCTAATTTATAAAA	758	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367749	907	3e-22	764 - 822	98	58 / 59	plus	ABC03151 ABC03152 ABC03155 ABC03156 ABC03157
Harvest21	ABC03154	918	3e-25	759 - 818	100	60 / 60	plus
Harvest21	ABC31451	394	5e-23	236 - 294	98	58 / 59	plus
Harvest21	ABC03156	416	5e-23	258 - 316	98	58 / 59	plus	ABC03156
Harvest35	U35_50935	904	3e-25	752 - 811	100	60 / 60	plus
Harvest35	U35_14953	920	3e-25	759 - 818	100	60 / 60	plus
Harvest35	U35_14955	1034	5e-23	874 - 932	98	58 / 59	plus

Contig Sequence (920 bp)

>U35_14953 920 Hv_44K_v2
GCACAACCACAAACAGGAACACAAGACAAGGAAATCAATAAGATGGCATCCTCCTGTTCC
TTCCTTCTCCTCGCTGCTCTTCTTGCGTTGGTCTCATGGCAGGCAACTTCCTCCGACCCT
AGCCCACTCCAAGACTTTTGTGTGGCCGACATGCATTCACCAGTGCGTGTAAATGGGTTT
GTTTGCAAGAACCCTATGGATGTAAACGCTGATGACTTCTTCAAGGCAGCCGCCCTCGAC
AAGCCTAGGGTGACAAACAAGGTTGGCTCCAACGTCACCTTGATCAACGTCATGCAGATT
GCTGGACTCAACACCCTCGGCATCTCAATTGCGCGCATCGACTATGCTCCCTTGGGTCAG
AACCCGCCACATACGCACCCTCGCGCCACTGAGATCCTCACGGTACTCGAGGGGACACTG
TATGTCGGATTTGTCACATCCAACCTGCCTGCACCCAACAGAAACAAGTTCCTCTCGAAG
GTGCTCAACAAAGGTGATGTATTTGTCTTCCCCGTGGGGCTCATTCACTTTCAGTTCAAC
CCCAACCCCCATCAGCCCGCTGTTGCAATTGCCGCGCTCAGCAGCCAGAACCCAGGGGCT
ATCACAATTGCCAATGCAGTGTTTGGGTCAGACCCAGCAATATCAGATGATGTTCTTGCC
AAGGCGTTTCAGGTGGAAAAGAATACTATAGACTGGCTCCAGGCTCAGTTCTGGGAGAAC
AACCACAATTAAGTCACACATTGGGTGATTACACGGACGACACGTGCGTAAATTAAGGGC
ATGATTGAGTTCCTAGATATGCATCCTAATTTATAAAATAAAAGGAGCATATGTAATTGT
GTGCCTGTAATCAGTGAATGTATTTCTACCTTTTAAATAATCAAAAATATTGTTTTTTAT
CAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_14953 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g08990.1	225	3e-123	protein\|Cupin domain containing protein, expressed
Brachypodium v1_2	Bradi3g15190.1	226	2e-126
Arabidopsis v10	AT5G39110.1	222	3e-72	RmlC-like cupins superfamily protein \| chr5:15657802-15658584 REVERSE LENGTH=222