barSeed - Barley Seed Development Database

Probe CUST_4541_PI390587928

Source Contig U35_14955

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4541_PI390587928	Hv_44K_v2	ACACACGTGCGTAAATTAAGGGCATGGTTGAGTTCCTAGATATGCATCCTAATTTATAAA	871	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK367749	907	2e-24	762 - 821	100	60 / 60	plus	ABC03151 ABC03152 ABC03155 ABC03156 ABC03157
Harvest21	ABC03156	416	3e-25	256 - 315	100	60 / 60	plus	ABC03156
Harvest21	ABC31451	394	4e-24	236 - 293	100	58 / 58	plus
Harvest21	ABC03154	918	2e-22	760 - 817	98	57 / 58	plus
Harvest35	U35_14955	1034	3e-25	872 - 931	100	60 / 60	plus
Harvest35	U35_50935	904	2e-22	753 - 810	98	57 / 58	plus
Harvest35	U35_14953	920	2e-22	760 - 817	98	57 / 58	plus

Contig Sequence (1034 bp)

>U35_14955 1034 Hv_44K_v2
AGGCAGGAACACAAGACAAGGAAATCAATAAGATGGCATCCTCCTGTTCCTTCCTTCTCC
TCGCTGCTCTTCTTGCGTTGGTCTCATGGCAGGCAACTTCCTCCGACCCTAGCCCACTCC
AAGACTTTTGTGTGGCCGACATGCATTCACCAGGTACAGTACGGCTTCTTACCATGCTTT
CACCAAATACATATGCTGAAATTAATTTCTAAAAATTATATGCATGTTCATATCACTTCC
TAGTAATACCCAAGCTTACACTCTACATCTCCTCTATTCACCAGTGCGTGTAAATGGGTT
TGTTTGCAAGAACCCTATGGATGTAAACGCTGATGACTTCTTCAAGGCAGCCGCCCTCGA
CAAGCCTAGGGTGACAAACAAGGTTGGCTCCAACGTCACCTTGATCAACGTCATGCAGAT
TGCTGGACTCAACACCCTCGGCATCTCAATTGCGCGCATCGACTATGCTCCCTTGGGTCA
GAACCCGCCACATACGCACCCTCGCGCCACTGAGATCCTCACGGTACTCGAGGGGACACT
GTATGTCGGATTTGTCACATCCAACCTGCCTGCACCCAACAGAAACAAGTTCCTCTCGAA
GGTGCTCAACAAAGGTGATGTATTTGTCTTCCCCGTGGGGCTCATTCACTTTCAGTTCAA
CCCCAACCCCCACCAGCCCGCTATTGCAATTGCCGCGCTCAGCAGCCAGAACCCAGGGGC
TATCACAATTGCCAATGCAGTGTTTGGGTCAGACCCAGCAATATCAGATGATGTTCTTGC
CAAGGCGTTTCAGGTGGAAAAGAATACTATAGACTGGCTCCAGGCTCAGTTCTGGGAGAA
CAACCACAATTAAGTCACACATTGGGTGATTACACACGTGCGTAAATTAAGGGCATGGTT
GAGTTCCTAGATATGCATCCTAATTTATAAAATAAAAGGAGCATATGTAATTGTGTGCCT
GTAATCAGTGAATGTATTTCTACCTTTTAAATAATCAAAAATATCGTTTTTTATCAAAAA
AAAAAAAAAAAAAA

Homology of Contig U35_14955 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g08990.1	225	2e-107	protein\|Cupin domain containing protein, expressed
Brachypodium v1_2	Bradi3g17330.1	226	1e-109
Arabidopsis v10	AT5G39110.1	222	7e-63	RmlC-like cupins superfamily protein \| chr5:15657802-15658584 REVERSE LENGTH=222