- Probe CUST_4540_PI390587928
- Source Contig U35_14956
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_4540_PI390587928 | Hv_44K_v2 | ACAGAAACAAGTTCCTTTCCAAGGTGCTCAACAAAGGTGATGTGTTTGTCTTTCCCGTGG | 465 | GeneList: None MasterList: None |
Probe Values
This probe has no recorded values for this experimentProbe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_25554.1 | 429 | 2e-24 | 91 - 150 | 100 | 60 / 60 | plus | ABC03151 ABC03152 ABC03155 ABC03156 ABC03157 |
| MLOC | AK248686.1 | 901 | 3e-21 | 480 - 539 | 97 | 58 / 60 | plus | ABC03151 ABC03152 ABC03155 ABC03156 ABC03157 |
| MLOC | MLOC_9422.1 | 187 | 3e-21 | 67 - 126 | 97 | 58 / 60 | plus | ABC03151 ABC03155 ABC03157 |
| JLOC1 | JLOC1_17441.1 | 430 | 8e-25 | 92 - 151 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_6140.1 | 187 | 2e-21 | 66 - 125 | 97 | 58 / 60 | plus | |
| Harvest21 | ABC45715 | 396 | 3e-25 | 298 - 357 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC03151 | 915 | 3e-25 | 459 - 518 | 100 | 60 / 60 | plus | ABC03151 |
| Harvest21 | ABC03155 | 933 | 6e-22 | 471 - 530 | 97 | 58 / 60 | plus | ABC03155 |
| Harvest35 | U35_14956 | 567 | 3e-25 | 466 - 525 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14951 | 919 | 3e-25 | 466 - 525 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_14954 | 954 | 6e-22 | 478 - 537 | 97 | 58 / 60 | plus |
Contig Sequence (567 bp)
>U35_14956 567 Hv_44K_v2 CAAACAGGAACACAAGAGAAAAGAAGAGCCAAAGAAACTAATTAACTCAAATGGCAACCT CCTCTTCCATCCTTCTCCTTGCTGCCCTTCTTGCCTTGGTCTCATGGCAGGCCATTGCGT CCGATCCTGACCCACTCCAGGACTTTTGTGTCGCCGACATGCATTCACCAGTGCGTGTCA ATGGGTTCGTTTGCAAGAACCCGATGGAAGTTAATGCAGATGACTTCTTCAAGGCAGCCA ACCTCGACAAGCCTAGGGTGACCAACAAGGTTGGATCCAACGTCACTTTGATCAACGTCA TGCAGATTGCTGGACTCAACACCCTCGGAATCTCAATTGCACGCATCGACTATGCTCCCT TGGGCCAGAACCCACCACATACGCACCCTCGCGCCACTGAGATCCTCACGGTGCTCGAGG GGACACTGTACGTTGGCTTTGTCACATCCAACCAGCCCGCCCCCAACAGAAACAAGTTCC TTTCCAAGGTGCTCAACAAAGGTGATGTGTTTGTCTTTCCCGTGGGGCTCATCCACTTCC AATTCAACCCGAACCCCCACCAGCCTG
Homology of Contig U35_14956 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os08g08990.1 | 225 | 3e-94 | protein|Cupin domain containing protein, expressed |
| Brachypodium v1_2 | Bradi3g15220.1 | 227 | 8e-100 | |
| Arabidopsis v10 | AT5G39110.1 | 222 | 2e-58 | RmlC-like cupins superfamily protein | chr5:15657802-15658584 REVERSE LENGTH=222 |