barSeed - Barley Seed Development Database

Probe CUST_4538_PI390587928

Source Contig U35_14958

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_4538_PI390587928	Hv_44K_v2	GGAAGCCGGCAATGTAACTTCCCTGTTGATAATATGTCAACAAGCACTTAAGTATGATTC	753	GeneList: greenyellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.069	4.652	1.351	0.741	0.248	0.441
Raw	1918.423	2446.868	582.123	537.746	56.825	115.844

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72691.2	1112	2e-24	1046 - 1105	100	60 / 60	plus	ABC02411 ABC02412 ABC34519
JLOC1	JLOC1_48362.1	2938	8e-25	949 - 1008	100	60 / 60	plus
Harvest21	ABC02412	836	3e-25	755 - 814	100	60 / 60	plus	ABC02412
Harvest21	ABC34519	385	1e-23	25 - 84	98	59 / 60	minus	ABC34519
Harvest21	ABC02411	579	6e-22	510 - 563	100	54 / 54	plus	ABC02411
Harvest35	U35_14958	877	3e-25	754 - 813	100	60 / 60	plus
Harvest35	U35_14960	531	6e-22	462 - 515	100	54 / 54	plus

Contig Sequence (877 bp)

>U35_14958 877 Hv_44K_v2
TAGCTTCTCAAGAGATAAGAGAGTGCAAGGGAAGAGAGAAGCAAAGCTTGAGATGGCGCA
AACTATGGCGTCCATGACCGGCCTGTCACAGGGCGTGCGTCTCCCAGGCCCGGCCGGCAG
GCGCGCCAGCAGGTTCACCGTGAGGGCGTCGTCGGCGGAGGCCGAAGCCGCCGGCCGCCG
CGCGGTCCTTGGCCTCATGGCCAGCGGAGTCGTCGGCAGCGCGTTCGCTCAGGTGGTGCA
CGCCGGCACCGTCGCGGCCATCAAGGTTGGCCCGCCGCCTCCGCTCTCCGGTGGACTCCC
CGGCACGGACAACTCGGACGAGGCAAGGGACTTCGACCTGCCCCTGAAGAACCGGTTCTA
CCTGCAGCCGCTGCCACCGGCGCAGGCGGCGGTCCGGGCCAAGGAGTCGGCCCAGGACAT
CCTCAACCTCAAGCCGCTCATCGACAAGAAGCAATGGCCGTACGTCATGAACGACCTCCG
CCTCAGGGCCTCCTACCTGCGCTACGACCTCAAGACCGTCATCTCCTCCAAGACCACCAA
GGAGGAGAAGAAGGACCTCAAGGACCTCACCGGCAAGCTCTTCGCCACCCTCGACGGGCT
TGACCACGCAGCCAAGATCAAGAGCCCCACCGAGGCCGAGAAGTACTACGGCGAGACCAA
GACTGTTCTCGGCGATGTCCTCGCCAAGCTAGGCTAGATGGATCCACATAATGGCCGTGT
TGCTTTCAGGCCTTTTATGTTTTGTTCATATTTGGAAGCCGGCAATGTAACTTCCCTGTT
GATAATATGTCAACAAGCACTTAAGTATGATTCAAAAAAAAAAAAAAAAAAAATTACAAG
CACATGAAGAGTAAATAAACATTAAGGCAAACTCCGC

Homology of Contig U35_14958 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g36080.1	218	9e-67	protein\|oxygen evolving enhancer protein 3 domain containing protein, expressed
Brachypodium v1_2	Bradi1g25430.2	216	9e-83
Arabidopsis v10	AT4G21280.2	224	5e-51	\| Symbols: PSBQ, PSBQA, PSBQ-1 \| photosystem II subunit QA \| chr4:11334446-11335587 FORWARD LENGTH=224