barSeed - Barley Seed Development Database

Probe CUST_452_PI390587928

Source Contig U35_26395

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_452_PI390587928	Hv_44K_v2	ACAGGATGGTGACTGGTGGTATGCAAATGTTACTTTACCTGAAAGTACATTGGTGTTGGA	564	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.500	1.765	1.729	1.422	0.604	0.365
Raw	105.904	195.274	158.746	199.921	31.013	21.273

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54759.2	4405	3e-21	1878 - 1937	97	58 / 60	plus	ABC10722
MLOC	MLOC_54759.1	4704	3e-21	2189 - 2248	97	58 / 60	plus	ABC10722
JLOC1	JLOC1_35261.1	4718	2e-21	2159 - 2218	97	58 / 60	plus
Harvest21	ABC26208	686	3e-25	565 - 624	100	60 / 60	plus
Harvest35	U35_26395	686	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (686 bp)

>U35_26395 686 Hv_44K_v2
GAACCATTTCACTGAAAGATTGCATAAAAGTGAATTATCAGGGGATTGGTGGTGTTGTAA
GCTATACATACCCAAGCAGGCATACAGATTAGACTTTGTGTTCTTTAATGGTGACACCGT
CTATGAAAATAACAGTTATAATGATTTCGTCCTGCATATAGAAAGTGACATTGATGAACA
CTCATTTGAGGACTTCTTGCTTGAAGAAAAGCAGAGGGAACTTGAAAGGCTTGCTGCAGA
AGAAGCTGAAAGAGAAAGACAAGCCGAGGAGGAGCGCCGGAAGGAGGAAGAAAGGGCCGC
AATGGAGGCTGATAGGGCACAAGCAAAGGCTGAGGTCGAGATGACGAGGAATAACTTGCA
GCATGTGTTGGGTTTAGCCAGCAGATATGCCGATAATCTATGGTATATAGAGCCTAACAC
ATACAAAGGAGGGGATAGGGTCAGATTATACTATAATCGAAGCTCGGGACCACTAAAGCA
TAAAAATGAGATTTGGTTGCATGGGAGTTACAATAACTGGACTGATGGGCCCTCTATTGT
TGAGAGGCTAGTCAAATCTGACGAACAGGATGGTGACTGGTGGTATGCAAATGTTACTTT
ACCTGAAAGTACATTGGTGTTGGACTGNGTTTTTGCTGATGGACCACCTGNGAACGCAAG
GAAGTATGATAACAATGGGAAGCGAG

Homology of Contig U35_26395 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g53310.1	1217	6e-93	protein\|soluble starch synthase 3, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi5g22310.1	1286	5e-98
Arabidopsis v10	None